Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11759 295 8e-75 seq1473 197 2e-45 >seq11759 Length=791511 Score = 295 bits (326), Expect = 8e-75 Identities = 518/748 (69%), Gaps = 11/748 (1%) Strand=Plus/Plus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||||||| || ||||| | ||| || || || | ||||||||||| |||||| Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAA-ATGT 33291 ||||| || | || || ||| |||| | | || | | || |||| |||| Sbjct 466003 GACCGCCTCCCTCATGATGTCATAAACCCTTTCCGCCGTAGGCTTGTTG--ATAATATGT 466060 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 ||||| || | ||||| ||||| ||| || || ||||||| ||| || || || || Sbjct 466061 TTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTA 466120 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 ||| ||||| || ||||| || |||||||| || ||||| || |||||||| ||||| Sbjct 466121 CTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAA 466180 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 ||||||||||| | ||||| || ||||| || || | || | ||| | || || Sbjct 466181 CCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCC 466240 Query 33472 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | | || | |||||| | | ||||||||||||||||| ||||| |||| |||| Sbjct 466241 TTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTT 466300 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 | ||||| ||||| ||| ||| ||| | ||| || || || |||||||||| | Sbjct 466301 TGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGA 466360 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 ||| |||||||| |||||||||||||| | ||| | || | ||| || ||||| | | Sbjct 466361 AGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGA 466420 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTC 33706 ||||||| ||| || || || ||||||| ||| | | ||||||||| || || | Sbjct 466421 GCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGC 466478 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33766 | ||||||||||| || || ||||| |||| || || | |||| | | | Sbjct 466479 CATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAA 466538 Query 33767 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 | | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || || | Sbjct 466539 GGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGG 466598 Query 33827 CCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 | | || || || || | | ||| || |||| |||||||| || | | ||| |||| Sbjct 466599 CAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAATC 466658 Query 33887 TATTTGGATTTGGTGCAAGGATGGGTTC 33914 | ||||| || |||| || ||||| Sbjct 466659 TTCGGGGATTAGGAACAAGTATAGGTTC 466686 >seq1473 Length=538379 Score = 197 bits (218), Expect = 2e-45 Identities = 368/536 (69%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 ||||| ||||| || ||||| |||| |||||| || | || ||||| | | | | Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || || ||||| | || | ||| || | ||| | |||||| ||| Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386 Query 63336 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63395 || | || ||||| | | || || |||||||| ||||||||||| | || | |||| Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326 Query 63396 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63455 ||| | || | || | | ||| || | || |||||| || |||||||| || | | Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266 Query 63456 ATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 ||| | | | || || || || | | ||||| |||| || || || || || Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 || ||||| | ||| ||| |||| | ||||||||| |||||||| || || || || || Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149 Query 63573 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63632 || |||| | ||||||||| ||||| || | | || || |||||||| | || Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089 Query 63633 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63692 || || ||||| | ||||| |||||||| | |||||| || ||||||||||| | ||| Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029 Query 63693 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 | ||| |||||| |||| | ||| ||||| ||||||| |||||| || || Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622844951003960