Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 158 3e-33
seq11759 96.9 9e-15
>seq1473
Length=538379
Score = 158 bits (174), Expect = 3e-33
Identities = 459/688 (67%), Gaps = 43/688 (6%)
Strand=Plus/Plus
Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513
|| ||| | ||||| ||||| || | || ||||| ||| | ||||| || || ||
Sbjct 273979 CCTCAGTACATGTTTATGCGCGTCTCGATAGGTATTCATGGTGAAGATGTGGACGCTGCT 274038
Query 363514 ATTGAAACATATAAGCT----TCT---AAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566
||||| || ||||| || ||| ||||| | | |||||||| | | || ||
Sbjct 274039 ATTGAGACCTATAATCTAATGTCTGAAAAGTGGTTG---ATTCACGC----CTCACCCAC 274091
Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626
| | |||||||| || | | | || |||||||| || ||| | || | ||||||
Sbjct 274092 TCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAA 274151
Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686
||||| ||||||||||| | |||||| || || | ||||| || || || || ||
Sbjct 274152 AGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAA 274211
Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCA-CAGAAC--AGT-TACATT 363741
|| || || || ||| | |||||||| |||| | ||| || ||| ||
Sbjct 274212 CGCGGGTGGGATCGGTCT---------CAATGTTCACTGCATCCGAAGCAAGAATACGTT 274262
Query 363742 ---CGC-GGCAC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795
||| || || | ||||| || || || || || || |||||||| || || ||
Sbjct 274263 TATCGCTGGAACCAATGGGGAG--TCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAAC 274320
Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855
| || || | || ||||| ||||| || || || || || ||||| || |||
Sbjct 274321 AGCACCGCTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTAT 274380
Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915
||||| || ||| | ||| | | ||||| | ||| | ||||| ||||| ||
Sbjct 274381 CTCGAACCATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCT 274440
Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975
||||| | || || || ||||| ||| |||||||||||| | || | || ||||||
Sbjct 274441 GAGGAGATTCGCGCTCGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATGAAG 274500
Query 363976 CGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG-CCCACACGAATGTCCAGGTCTTTC 364034
|| || |||||||||| ||| | || | | | ||| || ||||| || |||||| |
Sbjct 274501 CGAGTTGAGGCAGGTAGTTTGTGGAC-CTTTATGGACCCCCATGAATGCCCCGGTCTTGC 274559
Query 364035 CGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG-AGGGAAAG 364092
|| ||| ||||| || || | || || |||| ||||| || |||| ||| | ||
Sbjct 274560 TGACTGT-TGGGGGGAGGAATTTGAAATGCTTTACGCGAAGTACGAGTCGGAAGGTAGAG 274618
Query 364093 GCTCGTAAGACAATTCCCGCAC-AGAAG 364119
|| || ||||| | ||||| | |||||
Sbjct 274619 GC-CGCAAGACGCTGCCCGCTCAAGAAG 274645
>seq11759
Length=791511
Score = 96.9 bits (106), Expect = 9e-15
Identities = 147/209 (70%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGT 22494
|| ||||| ||||||||||| | ||||| ||| || || | ||| || |||
Sbjct 466281 AAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAATAAAAAGGCACCCTACGCCGAGCGT 466222
Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554
|| | || || |||| ||||||||| | ||||||||||| ||||| | | || ||
Sbjct 466221 CTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATTTTC 466162
Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614
||||| || || |||| | ||||| || || || ||| |||||| | || || |||
Sbjct 466161 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGA 466102
Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643
|| || || || || || |||||||| ||
Sbjct 466101 GACGAAGGCCTCCACACGGATTTTGCATG 466073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303134322568442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |