Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1473 158 3e-33 seq11759 96.9 9e-15 >seq1473 Length=538379 Score = 158 bits (174), Expect = 3e-33 Identities = 459/688 (67%), Gaps = 43/688 (6%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||| | ||||| ||||| || | || ||||| ||| | ||||| || || || Sbjct 273979 CCTCAGTACATGTTTATGCGCGTCTCGATAGGTATTCATGGTGAAGATGTGGACGCTGCT 274038 Query 363514 ATTGAAACATATAAGCT----TCT---AAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 ||||| || ||||| || ||| ||||| | | |||||||| | | || || Sbjct 274039 ATTGAGACCTATAATCTAATGTCTGAAAAGTGGTTG---ATTCACGC----CTCACCCAC 274091 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | |||||||| || | | | || |||||||| || ||| | || | |||||| Sbjct 274092 TCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAA 274151 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||||| ||||||||||| | |||||| || || | ||||| || || || || || Sbjct 274152 AGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAA 274211 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCA-CAGAAC--AGT-TACATT 363741 || || || || ||| | |||||||| |||| | ||| || ||| || Sbjct 274212 CGCGGGTGGGATCGGTCT---------CAATGTTCACTGCATCCGAAGCAAGAATACGTT 274262 Query 363742 ---CGC-GGCAC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 ||| || || | ||||| || || || || || || |||||||| || || || Sbjct 274263 TATCGCTGGAACCAATGGGGAG--TCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAAC 274320 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 | || || | || ||||| ||||| || || || || || ||||| || ||| Sbjct 274321 AGCACCGCTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTAT 274380 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAA 363915 ||||| || ||| | ||| | | ||||| | ||| | ||||| ||||| || Sbjct 274381 CTCGAACCATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCT 274440 Query 363916 GAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAG 363975 ||||| | || || || ||||| ||| |||||||||||| | || | || |||||| Sbjct 274441 GAGGAGATTCGCGCTCGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATGAAG 274500 Query 363976 CGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG-CCCACACGAATGTCCAGGTCTTTC 364034 || || |||||||||| ||| | || | | | ||| || ||||| || |||||| | Sbjct 274501 CGAGTTGAGGCAGGTAGTTTGTGGAC-CTTTATGGACCCCCATGAATGCCCCGGTCTTGC 274559 Query 364035 CGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG-AGGGAAAG 364092 || ||| ||||| || || | || || |||| ||||| || |||| ||| | || Sbjct 274560 TGACTGT-TGGGGGGAGGAATTTGAAATGCTTTACGCGAAGTACGAGTCGGAAGGTAGAG 274618 Query 364093 GCTCGTAAGACAATTCCCGCAC-AGAAG 364119 || || ||||| | ||||| | ||||| Sbjct 274619 GC-CGCAAGACGCTGCCCGCTCAAGAAG 274645 >seq11759 Length=791511 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGT 22494 || ||||| ||||||||||| | ||||| ||| || || | ||| || ||| Sbjct 466281 AAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAATAAAAAGGCACCCTACGCCGAGCGT 466222 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || | || || |||| ||||||||| | ||||||||||| ||||| | | || || Sbjct 466221 CTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATTTTC 466162 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||| || || || ||| |||||| | || || ||| Sbjct 466161 TGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGA 466102 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTG 22643 || || || || || || |||||||| || Sbjct 466101 GACGAAGGCCTCCACACGGATTTTGCATG 466073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303134322568442