Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1039 116 3e-21 seq7336 98.7 8e-16 seq7187 98.7 8e-16 seq7000 87.8 1e-12 >seq1039 Length=57342 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| ||||||||||| | || ||| | || Sbjct 42887 AGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCT 42946 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || |||||| | ||||| || || |||||| || | |||||| ||||| Sbjct 42947 TCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCT 43006 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | ||||||| ||| ||| |||| ||||| ||| Sbjct 43007 TGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTT 43066 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || |||||||| ||||| Sbjct 43067 TTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| |||||| || ||||||||||| ||||||||||||| | Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || ||||| ||| | || | || |||||||| || Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || ||||| |||||| | | | | ||| | |||||| Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGC--CTTCACATTCTCTATCGAGTCACTCGGCTCCA 49422 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || || ||||| Sbjct 49421 CCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| |||||||| ||||||||||| | || || | || Sbjct 31999 AGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCT 32058 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || |||||| | || || || || ||||| || | |||||| ||||| Sbjct 32059 TCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCT 32118 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | | || | ||||||| ||||| ||||| ||| Sbjct 32119 TGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGATTGTT 32178 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| ||| || || || |||||||| Sbjct 32179 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||| |||||||| ||||||||||| | | Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 31587 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || ||||| || || |||||| | || || || || ||||| || Sbjct 31588 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 31647 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||| | | |||||| | | | | || | ||||||| Sbjct 31648 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACC 31707 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||| ||||| ||||| || || || || || ||||||||| Sbjct 31708 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755 >seq7336 Length=62802 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||||||| || || || | ||| || || ||||||||||| || || ||||||| Sbjct 18547 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAG 18606 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| || || || || || | |||||||| ||||| || || Sbjct 18607 AGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 18666 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || |||||| || || | | | | || | ||||| Sbjct 18667 ATTCCCTCTTTGTCTTGGATTTTTGCT--TTTACGTTCTCGATGGAATCACTTGGCTCAA 18724 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| ||||||||||| || || || || |||||||| |||||| Sbjct 18725 CCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774 >seq7187 Length=4100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||| |||||||| ||||||||||| | | Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 675 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | || ||||| || || |||||| | || || || || ||||| || Sbjct 676 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 735 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | | |||||| | | | | || | ||||||| | Sbjct 736 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACT 795 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| ||||| || |||| ||| || || || |||||||| Sbjct 796 TCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842 >seq7000 Length=1252665 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||| || | | || | ||||||||||| Sbjct 319601 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 319660 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| ||||||| ||||||||||| || | ||||| ||||| ||| | Sbjct 319661 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTA 319720 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || ||| || || || | ||||| ||||| ||||| Sbjct 319721 GCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTA 319780 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| Sbjct 319781 AGAGTTTTCACAAAAATCTGCAT 319803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405023172121690