Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq12908 136 3e-27
seq1039 118 7e-22
seq7187 114 9e-21
seq7000 111 1e-19
seq11534 102 5e-17
seq10826 102 5e-17
>seq12908
Length=643
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 47 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 106
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 107 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 141
>seq1039
Length=57342
Score = 118 bits (130), Expect = 7e-22
Identities = 166/232 (72%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||| | |||||| ||| |||||||| || ||||| |
Sbjct 31980 CATT-CCACCACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGT 32038
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
||||||| ||| | || || || || ||||| ||||| || |||||||| || || |
Sbjct 32039 CAGACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTG 32098
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
|| | ||| || ||||| ||| || ||||||||||| | | ||| | |
Sbjct 32099 GTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCT 32158
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| ||||| | ||| || ||||| || ||||| || |||||||| ||||||||
Sbjct 32159 CCACTTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | |||||||| |||||| ||||| || |||||| ||||| ||||| || |||
Sbjct 42188 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42247
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || |||| || ||||| || || || | ||||| || || | ||
Sbjct 42248 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42307
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268
| ||| || ||||| || || ||||||||||| | ||| ||| | || |
Sbjct 42308 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC--TCCA 42365
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || | |||||||| || || |||| ||| ||||||||||| ||||||
Sbjct 42366 CCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 42415
Score = 104 bits (114), Expect = 2e-17
Identities = 152/213 (71%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167
||||||||| ||||| |||||||||||| ||||| || |||| || | || ||
Sbjct 49582 CACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523
Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227
|| || || || ||||| || | |||||||| || | || | ||| || |||||
Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 49463
Query 38228 AATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285
||| ||| ||||||||||| | ||| ||| | || || || | ||||||||
Sbjct 49462 AATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGC--TCCACCTCCAGCGTAATAGTC 49405
Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || |||| ||| ||||||||||| ||||||
Sbjct 49404 TTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372
Score = 102 bits (112), Expect = 5e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||| | |||||| ||| |||||||| || ||||| |||||||| ||| |
Sbjct 31539 ACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACC 31598
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || || || ||||| ||||| || |||||||| || || | || | |||||| ||
Sbjct 31599 ATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTT 31658
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|| ||| || ||||||||||| | | ||| | || || || | ||| ||
Sbjct 31659 ATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGAT 31718
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || | || |||||||| ||||||||
Sbjct 31719 TGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | |||||||| |||||| ||||| || |||||| ||||| ||||| || |||
Sbjct 41732 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 41791
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || |||| || ||||| || || || | ||||| || || | ||
Sbjct 41792 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 41851
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268
| ||| || ||||| || || ||||||||||| | ||| ||| | || |
Sbjct 41852 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC--TCCA 41909
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || | |||||||| || || || | || ||||| ||||||||||||
Sbjct 41910 CCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | |||||||| |||||| ||||| || |||||| ||||| ||||| || |||
Sbjct 41960 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42019
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || |||| || ||||| || || || | ||||| || || | ||
Sbjct 42020 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42079
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAA 38268
| ||| || ||||| || || ||||||||||| | ||| ||| | || |
Sbjct 42080 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC--TCCA 42137
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || | |||||||| || || || | || ||||| ||||||||||||
Sbjct 42138 CCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | |||||||| |||||| ||||| || |||||| ||||| ||||||||||||
Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || || | || ||||| || || || | ||||| || || | ||
Sbjct 42476 AAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGA 42535
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCA 38267
| ||| || || || || || |||||| |||| | | | ||||| ||
Sbjct 42536 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGT---CACTTGGCTCC 42592
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || || || | |||||| || |||||||||||
Sbjct 42593 ACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | ||||| ||||| || |||||||||||| ||||| || ||
Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || || ||||| || ||||| || | || || ||||| | |||
Sbjct 49311 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 49252
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || ||||| ||| || |||||| |||| | | ||| | | |||||
Sbjct 49251 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 49192
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || ||||| || || || | || |||||||| || ||||||
Sbjct 49191 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCATG 49144
>seq7187
Length=4100
Score = 114 bits (126), Expect = 9e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||| | |||||| ||| |||||||| || ||||| |||||||| ||| |
Sbjct 627 ACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACC 686
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || || || ||||| ||||| || |||||||| || || | || | ||| || ||
Sbjct 687 ATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTT 746
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| ||| || ||||||||||| | | ||| | || ||||| | ||| ||
Sbjct 747 GTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGAT 806
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || ||||| || |||||||| ||||||||
Sbjct 807 TGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842
>seq7000
Length=1252665
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
||||| || |||||| ||||||||||||||||| || |||| | || || |||||
Sbjct 319601 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 319660
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || || ||||| || | || | || || |||||| ||| ||
Sbjct 319661 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTA 319720
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||||| | || ||| | ||| || || | || |||||||| || ||
Sbjct 319721 GCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTA 319780
Query 38295 AAGGTTTTCACGAATATCTGCATG 38318
| |||||||| || |||||||||
Sbjct 319781 AGAGTTTTCACAAAAATCTGCATG 319804
>seq11534
Length=1991
Score = 102 bits (112), Expect = 5e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1864 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACT 1805
Query 20004 CGCGGTAATATTTAGCCTT 20022
|| | |||||||||||
Sbjct 1804 CGTGCCCGTATTTAGCCTT 1786
>seq10826
Length=552
Score = 102 bits (112), Expect = 5e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 218 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACT 159
Query 20004 CGCGGTAATATTTAGCCTT 20022
|| | |||||||||||
Sbjct 158 CGTGCCCGTATTTAGCCTT 140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334893597038861
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