Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 268 1e-66
seq1473 197 2e-45
>seq11759
Length=791511
Score = 268 bits (296), Expect = 1e-66
Identities = 497/723 (69%), Gaps = 15/723 (2%)
Strand=Plus/Plus
Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590
||||||||| || ||||| | ||| || || || | ||||||||||| |||||||
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGG--TGGATACAATAAAT 32646
|||||| || | || || || || | |||| | | || || | |||| |
Sbjct 466003 GACCGCCTCCCTCATGATG--TCATAAACCCTTTCCGCCGTAGGCTTGTTGATAATA--T 466058
Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706
||||||| || | ||||| ||||| ||| || || ||||||| ||| || | || |
Sbjct 466059 GTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCAT 466118
Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766
| ||| ||||| || ||||| || |||||||| || ||||| || ||||| |||||||
Sbjct 466119 TACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATG 466178
Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826
| ||||||||||| | ||||| || || || || || | || | ||| | || |
Sbjct 466179 AACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTG 466238
Query 32827 CGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 32883
| | | || | |||||| | | ||||||||||||||||| ||||| |||| |
Sbjct 466239 CCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACG 466298
Query 32884 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 32943
| | || || ||||| ||| ||| ||| | ||| || || || ||||| ||||
Sbjct 466299 TTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCA 466358
Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003
|||| |||||||| |||||||||||||| | ||| | ||| | ||| || || || |
Sbjct 466359 GAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAAC 466418
Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTAT 33061
|||||||| ||| || || || ||||||| ||| | || ||||||||| || ||
Sbjct 466419 GAGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGAT 466476
Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33121
|| ||||||||||| || || ||||| |||| || || | |||| | |
Sbjct 466477 GCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATT 466536
Query 33122 TAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181
|| | | ||| ||| ||| ||| || | || ||| ||||| || || ||||| || ||
Sbjct 466537 AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596
Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
|| | || || || || | | ||| || ||||| ||||| || || | | ||| ||
Sbjct 466597 GGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAACGAA 466656
Query 33242 TCT 33244
|||
Sbjct 466657 TCT 466659
>seq1473
Length=538379
Score = 197 bits (218), Expect = 2e-45
Identities = 368/536 (69%), Gaps = 6/536 (1%)
Strand=Plus/Minus
Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130
||||| ||||| || ||||| |||| |||||| || | || ||||| | | | |
Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446
Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190
||||| || || ||||| | || | ||| || | ||| | |||||| |||
Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386
Query 63191 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63250
|| | || ||||| | | || || |||||||| ||||||||||| | || | ||||
Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326
Query 63251 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAG 63310
||| | || | || | | ||| || | || ||| ||||| |||||||| || | |
Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266
Query 63311 ATATAGCTTCCACTGGCA-CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367
||| | | | || || || || | | ||||| |||| || || || || ||
Sbjct 274265 ATAAA-CGTATTCTTGCTTCGGATGCAGTGAACATTGA--GACCGATCCCACCCGCGTTT 274209
Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427
|| ||||| | ||| ||| |||| | ||| ||||| || ||||| ||||| || || ||
Sbjct 274208 TTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTC 274149
Query 63428 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 63487
|| |||| | ||||||||| ||||| || | | || || |||||||| | ||
Sbjct 274148 ATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTG 274089
Query 63488 GGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547
|| || |||||| | ||||| |||||||| | |||||| || ||||||||||| | |||
Sbjct 274088 GGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCC 274029
Query 63548 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
| ||| |||||| |||| | ||| ||||| ||||||| |||||| || ||
Sbjct 274028 ACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTC 273973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633527997227600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |