Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1039 129 5e-25 seq7336 120 3e-22 seq7000 107 2e-18 >seq1039 Length=57342 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| |||| || || | || || | || |||||| || | Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | || ||| |||| ||||| | ||| ||||| || || |||||||| ||||| Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCA-AGACAAGGAGGGCATTCCACCAGACCA 49491 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || || ||||||| |||||| || ||| ||||| Sbjct 49492 ACAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAA 49551 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || ||||| ||||| Sbjct 49552 CATTCAAAAGGAGTCAACTCTGCATTTGGTGCT 49584 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| |||| || || | || || | || |||||| || | Sbjct 42414 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42355 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| ||||| || ||| ||||| || || |||||||| ||||| Sbjct 42354 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42295 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || || |||| |||| |||||| || ||| ||||| Sbjct 42294 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42235 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| || || ||||| Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCT 42203 >seq7336 Length=62802 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| ||||| |||||| | || || ||| |||| || | || || ||| | Sbjct 18777 AATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCC 18718 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | |||||| | || ||||||| |||||||| || || ||||| || Sbjct 18717 AAGTGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGA 18658 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| ||| |||| || ||||| || || ||||| || | || || | ||| || Sbjct 18657 TCAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTA 18598 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| || || || || ||| | || ||||| ||| ||||||| Sbjct 18597 TAATATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGAGG 18547 >seq7000 Length=1252665 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | ||||| ||| | ||||| | || || || | || Sbjct 319803 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCC 319744 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||| ||| ||||| | || | ||| ||||| || |||||||| || ||||| Sbjct 319743 GATTCTATTGAGAATGTGAAGGCTAAGATTCAG-GACAAGGAGGGGATTCCGCCAGACCA 319685 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||||||||| ||||| ||||| || |||| || | | |||||||| Sbjct 319684 ACAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAA 319625 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || || | ||||| Sbjct 319624 TATTCAGAAGGAGTCAACCCTTCACCTTGTGCT 319592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433258652759765