Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11759 214 2e-50 >seq11759 Length=791511 Score = 214 bits (236), Expect = 2e-50 Identities = 391/573 (68%), Gaps = 0/573 (0%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || || || | ||||||||||| |||| |||||| || || || | Sbjct 466072 GCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAG 466131 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || |||||||| ||||||||| || Sbjct 466132 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAA 466191 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| ||||| || || ||||| | ||| ||||| | ||| ||| | Sbjct 466192 TACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGC 466251 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| | | ||||||||||| || || || ||| || | |||| || ||||| Sbjct 466252 AATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTT 466311 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| || | || || || | ||| | ||| |||||||| | ||||| ||||| Sbjct 466312 AAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACAT 466371 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||||||||| | || || | || | ||| | ||| || ||||| | ||| || | || Sbjct 466372 TTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGAAT 466431 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || || || | | |||| || ||||||||||| || || ||||| ||||| Sbjct 466432 TTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGC 466491 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 || |||||||| | || | || || || || |||| ||||| | ||||| || Sbjct 466492 GAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAGTC 466551 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 | ||||| || | ||||| ||||| || || ||||| || || || | ||||| || Sbjct 466552 AGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAACCGCTTTCTT 466611 Query 93631 GTACATATCCCATATGTCTTGATATTGAATTGG 93663 ||| | ||||| || || || ||||| || || Sbjct 466612 GTAGAACTCCCAAATATCATGGTATTGGATGGG 466644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556769398260440