Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1039 95.1 1e-14 >seq1039 Length=57342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| || || | ||||||||||| || || |||| |||||||||| Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || ||| ||||| || ||| |||| || || Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | ||||| | |||||| || || ||||||||| | || || | || || || Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || ||| | ||| | || || || ||||| Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGG 42872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422972299190200