Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1039 156 4e-33 seq7336 143 2e-29 seq7000 136 3e-27 seq7187 123 2e-23 >seq1039 Length=57342 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| || ||| ||||||| ||||| |||| || || |||||| ||| Sbjct 43099 GATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAG 43040 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || || ||||||||||||||||| |||||||| || || Sbjct 43039 CGACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCA 42980 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| ||||| ||||| || || ||||| || ||| || ||| | || || ||||| Sbjct 42979 GCAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAA 42920 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || || ||| | ||| | || | ||| | || || ||| Sbjct 42919 CATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGGT 42871 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || || || ||||| |||| || |||||||| ||| Sbjct 32211 GATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAG 32152 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| | | || || | || || ||||||||||||||||| |||||||| || || Sbjct 32151 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 32092 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||| || || ||||| || ||| || || | || || ||||| Sbjct 32091 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 32032 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 ||| ||||| ||||||||| | ||| Sbjct 32031 CATCCAAAAGGAATCCACCCTTCAT 32007 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || || || ||||| | | Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || ||| ||||||||||||||||| |||||||| || ||| Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 49492 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| ||||| ||||| || ||| |||||| | ||||| |||||| Sbjct 49493 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 49552 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || || || | ||||| || Sbjct 49553 ATTCAAAAGGAGTCAACTCTGCATTTGGT 49581 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| || || || || | | Sbjct 49145 ATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 49204 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || || |||||||||||||||||||| ||||| ||||| Sbjct 49205 GATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCAG 49264 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||||| || ||| ||||| | ||||| |||||| Sbjct 49265 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 49324 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 49325 ATTCAAAAGGAGTCAAC 49341 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || || || | || || || ||||| | | Sbjct 41958 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41899 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || |||||||||||||| |||||||| || || Sbjct 41898 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 41839 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| |||||||| |||||| | ||||| |||||| Sbjct 41838 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 41779 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| ||||| || || Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 41732 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || || || | || || || ||||| | | Sbjct 42186 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42127 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || || |||||||||||||| |||||||| || || Sbjct 42126 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42067 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| |||||||| |||||| | ||||| |||||| Sbjct 42066 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42007 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| ||||| || || Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 41960 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| ||||||| || || | || || ||||| ||| ||| Sbjct 42870 ATGCAAATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTGGAAGTTGAACCCAGT 42811 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || || || || |||||||| |||||||| |||||| Sbjct 42810 GATTCGATTGAGAATGTAAAGGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 42751 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||||| || || ||||| | || || || ||| Sbjct 42750 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGACTATAAC 42691 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 42690 ATTCAAAAGGAGTCAAC 42674 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || || || | || || || ||||| | | Sbjct 41730 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41671 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | || || ||||||||||||||||| |||||||| || ||| Sbjct 41670 GACTCAATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 41611 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| ||||| ||||| || ||| || || | || ||||||||| Sbjct 41610 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAAC 41551 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 41550 ATCCAGAAGGAATCGACC 41533 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| |||||||| || || ||||| | || || || || || Sbjct 42330 AAGATCCAAGACAAGGAGGGCATTCCACCAGACCAGCAACGATTGATCTTCGCAGGAAAG 42271 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| |||||||| |||||| | ||||| ||||||||||| || || || || | || Sbjct 42270 CAGCTAGAGGATGGTCGCACCTTGTCCGACTACAACATTCAGAAGGAGTCGACGCTTCAC 42211 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || |||| ||||| || || Sbjct 42210 TTGGTGCTGCGTTTGCGTGGTGG 42188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| | || || || || |||| | || ||||| | | Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | || || || ||||| |||||||| |||||||| || || Sbjct 42582 GACTCGATAGAGAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 42523 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || || ||| | |||||| |||||| | || ||||||||| Sbjct 42522 CAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATTACAAC 42463 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || |||| ||||| || || Sbjct 42462 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGG 42416 >seq7336 Length=62802 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| ||| | || || ||||| | || ||||| || || | | Sbjct 18773 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 18714 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || | | ||| |||||| |||||||| ||||| || ||||| |||||| Sbjct 18713 GATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 18654 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| ||||| || ||||| || ||||||||||| || ||| ||||||| || || Sbjct 18653 CAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAAT 18594 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || | ||| | ||| | || | || ||||| Sbjct 18593 ATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGAGG 18547 >seq7000 Length=1252665 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | ||||| ||||| |||||||||| || ||| | || Sbjct 319803 ATGCAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCC 319744 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || ||||| ||||||||||| ||||| || || ||| Sbjct 319743 GATTCTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAA 319684 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| || || |||||| || || | || |||||||| Sbjct 319683 CAGCGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAAT 319624 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 319623 ATTCAGAAGGAGTCAACC 319606 >seq7187 Length=4100 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || || || ||||| |||| || |||||||| ||| Sbjct 843 GATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAG 784 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| | | || || | || || ||||||||||||||||| |||||||| || || Sbjct 783 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 724 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||| || || ||||| || ||| || || | || || ||||| Sbjct 723 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 664 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| ||||| ||||||||| | ||| | || | || | || ||||| Sbjct 663 CATCCAAAAGGAATCCACCCTTCATCTTGTGCTTCGTCTTCGTGGAGG 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419660829223015