Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 122 7e-23
seq7000 100 2e-16
>seq1039
Length=57342
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| |||| | || | ||| | || || || |||||||||||||| ||
Sbjct 42869 ATACCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCA 42928
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || ||| |||||| | || || || || |||| || || || ||||||||
Sbjct 42929 GACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGT 42988
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| |||||| || | | |||| |||||| ||| |||
Sbjct 42989 GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCC 43048
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||||||||| ||||| || |||||||| |||||
Sbjct 43049 ACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| |||| | || | || | ||| || || ||||||||||| || ||
Sbjct 42641 ATACCACCACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCA 42700
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| ||| ||||| | || ||||||||| |||| | ||||||||| || ||
Sbjct 42701 GAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGT 42760
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || || || ||||| |||| | |||| | || ||| |||
Sbjct 42761 GGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCA 42820
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || |||||||| ||||| || ||||| || |||||
Sbjct 42821 ACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
|||||||||||| | | || ||||| | || || || |||||||||||||| |||
Sbjct 49600 ACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGA 49541
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || ||| |||||| | || || ||||| |||| | || |||||||| || ||
Sbjct 49540 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGG 49481
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
|||||| || ||||| ||||||| || | | || | | ||| | | || ||
Sbjct 49480 AATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCAC 49421
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|||| || | || || || ||||| || || || || || ||||||
Sbjct 49420 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| ||||| ||||| |||||||| || || |||||| |||||| | || || ||
Sbjct 31558 GTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTTCCC 31617
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || || || ||||| || ||||||||||| || || |||||| ||
Sbjct 31618 GCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTCGCCTTC 31677
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | | || ||| || || |||| || | ||||||||||| |||||
Sbjct 31678 ACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTC 31737
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 31738 TTCACGAAGATCTGCAT 31754
>seq7000
Length=1252665
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || ||||| |||||||| | | ||| ||| || | ||| || |||
Sbjct 319607 GTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCA 319666
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| | || |||||||||||||| || ||||| || || ||||| |||||| ||
Sbjct 319667 GCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTC 319726
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| | |||| | |||||| || | || | ||||||||||| ||||||
Sbjct 319727 ACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTT 319786
Query 114366 TTTACAAAAATCTGCATG 114383
|| |||||||||||||||
Sbjct 319787 TTCACAAAAATCTGCATG 319804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420067164185172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |