Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11759 125 1e-23 >seq11759 Length=791511 Score = 125 bits (138), Expect = 1e-23 Identities = 292/436 (67%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||||| ||| ||| ||||| || ||||| || || | | || | Sbjct 466502 TGGCTTTCTTCGCAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAATTTTTGTA 466443 Query 42484 AAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | ||||| || | || ||||| || || || || || | || | ||| | || || Sbjct 466442 ACGAGGTTCA--AATTCCCGAGGCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAA 466385 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | || ||||| ||||| | ||| || | || ||| || |||||| | || || Sbjct 466384 CATTCATTCTGAAATGTACTCTCTTCTGATCGATACCTACGTCAAGGATCCAATGGAACG 466325 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || ||||| || ||||| | ||| |||| || | |||||||| || ||||| Sbjct 466324 CGACTTTCTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGC 466265 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| | ||||| | | | | ||| | | || |||| | ||||| || || | || Sbjct 466264 GCTTAGGTGGATTGCAAATAAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGC 466205 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||| || ||| | ||||| || || | || || ||||| |||||||||||| || || Sbjct 466204 CGTTGAAGGCGTATTCTTTTCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGG 466145 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || |||||||| || || || ||||| | ||||| || || || | Sbjct 466144 TCTC-ATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACA 466086 Query 42841 GGGACTTTGCCTGCCT 42856 ||| ||||| ||||| Sbjct 466085 CGGATTTTGCATGCCT 466070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944184198524560