Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7000 96.9 3e-15 seq1039 87.8 1e-12 >seq7000 Length=1252665 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| || |||||||||||| |||||||| | || || Sbjct 319586 AGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGT 319645 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||||||||| ||||| || || ||||| || || ||| | | ||| Sbjct 319646 CCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCC 319705 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA---TTCGACC 34086 |||||| ||| |||| | ||||| | ||| |||| ||| | ||||||| Sbjct 319706 TTGTCCTGAAT------CTTA---GCCTTCACATTCTCAATAGAATCGGAAGGTTCGACC 319756 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||||| ||||| || ||||||||||| || ||||| Sbjct 319757 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803 >seq1039 Length=57342 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| || |||||| ||||||||||| || | Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || ||||| || ||||| ||||| |||| |||||||||||| || Sbjct 49311 AGAGTG-CGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGG 49253 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGC 34078 | | ||| ||||| ||| || ||| | | |||| | |||| ||| || Sbjct 49252 GATACCCTCCTTGTCTTGAATCTTGGCCTTCA-CGTTCTCAATCGAATCACTAGGCTCAA 49194 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||| ||||||||||| Sbjct 49193 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || ||||| || |||||||| |||||| |||||||| || || | | | || || Sbjct 42653 AGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTG-CG 42711 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||| || || || |||| ||||| ||||| || | || ||| Sbjct 42712 ACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTC 42771 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCGCATTCGAC 34085 || ||| || || ||| | | || || | |||| | | ||| ||| | Sbjct 42772 CTTATCCTGGATCTTCGCCTTTAC---ATTCTCAATCGAATCACTGGGTTCAACTTCCAG 42828 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||| || || |||||||| || || |||||||||||||| Sbjct 42829 CGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396998856491062