Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 131 2e-25
seq7336 105 7e-18
>seq1039
Length=57342
Score = 131 bits (144), Expect = 2e-25
Identities = 151/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||||||||| ||||| |||| ||| ||||| | || || | |||||| || || ||
Sbjct 42907 CTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAA 42966
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || || |||||||| | ||| | || |||||||| | ||| | || | || |
Sbjct 42967 GATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGT-CTTGAATCTTCGCCTTCACAT 43025
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | |||||||| | |||||| || | |||||| |||||||| ||||| ||||| |
Sbjct 43026 TCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCA 43085
Query 42196 CAAAGATTTGCATTTTCACGC 42216
|||| |||||||| | ||||
Sbjct 43086 CAAAAATTTGCATCGTAACGC 43106
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||||||||| || || |||| ||||| || |||| || | |||||||||||||||
Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | ||||| || || | ||| | || |||||| ||| ||| || || | |
Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || || || | ||| || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858
Query 42197 AAAGATTTGCAT 42208
||||||||||||
Sbjct 42859 AAAGATTTGCAT 42870
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
||||||| |||||| || | || |||||| ||||| ||||| || | || || ||
Sbjct 41741 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 41800
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
| || ||||||||||| || ||||| || | ||| |||||||| | ||| | || ||||
Sbjct 41801 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 41860
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170
||||| ||| || || | || | | | ||| |||| ||||| || | |||
Sbjct 41861 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 41920
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || ||||||||||| ||||| || |||||
Sbjct 41921 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
||||||| |||||| || | || |||||| ||||| ||||| || | || || ||
Sbjct 41969 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42028
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
| || ||||||||||| || ||||| || | ||| |||||||| | ||| | || ||||
Sbjct 42029 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42088
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170
||||| ||| || || | || | | | ||| |||| ||||| || | |||
Sbjct 42089 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42148
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || ||||||||||| ||||| || |||||
Sbjct 42149 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186
Score = 111 bits (122), Expect = 2e-19
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 41977 ATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 42036
||| ||| || | || || | ||||||||||| || |||||||||||| ||||| |
Sbjct 49604 ATCAACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGT 49545
Query 42037 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096
| | ||| || || | || || | |||||| ||||| || || | ||| || ||||| |
Sbjct 49544 CGGACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTG 49485
Query 42097 CTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGAT 42155
||| | || |||||||| | ||| | |||| || | || | | || ||| ||||
Sbjct 49484 GTGGAATGCCCTCCTTGT-CTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGC 49426
Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| || | ||| || || || || || || ||||| || || ||||||||
Sbjct 49425 TCCACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050
||||||| |||||| || | || |||||| ||||| ||||| || | || || ||
Sbjct 42197 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42256
Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110
| || ||||||||||| || ||||| || | ||| |||||||| | ||| | || ||||
Sbjct 42257 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42316
Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170
||||| ||| || || | || | | | ||| |||| ||||| || | |||
Sbjct 42317 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42376
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || || || || ||||| || || ||||||||
Sbjct 42377 ATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || |||||||||| ||||| || | || || | |||||| ||||| ||
Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136
|| | ||| || ||||| | ||| | || ||||||||| ||| | || | || | |
Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCT-TGAATCTTCGCCTTCACATT 41658
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | | ||| |||| ||||| || | ||| || || || || ||||||||||| ||
Sbjct 41659 CTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCAC 41718
Query 42197 AAAGATTTGCAT 42208
||| || |||||
Sbjct 41719 AAATATCTGCAT 41730
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| || | ||| |||||||||||| ||||| || | ||||| || |
Sbjct 49360 ACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACC 49301
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | ||| || ||||| || || | |||||||| || | ||| | | ||||||
Sbjct 49300 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTT 49241
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|| | ||| | || | || | || | | || || || | || || |||| ||||
Sbjct 49240 GT-CTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGA 49182
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || || |||||||| || |||||||||||
Sbjct 49181 TAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
>seq7336
Length=62802
Score = 105 bits (116), Expect = 7e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||||||||| || || | || |||||| |||| |||| ||||||||| |||||
Sbjct 18582 CTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAA 18641
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || || || || || | ||| | | ||| ||||| ||||||| ||| | |
Sbjct 18642 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 18701
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | | || || | || || || | || |||||||| || || || ||||| ||
Sbjct 18702 CTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 18761
Query 42197 AAAGATTTGCATT 42209
||| |||||||||
Sbjct 18762 AAAAATTTGCATT 18774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543123638409040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |