Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1039 123 2e-23 seq7336 114 1e-20 seq1473 89.7 5e-13 >seq1039 Length=57342 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| || |||| ||| || || ||||||||||| || || | Sbjct 42643 ACCACCACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGA 42702 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| | |||||| || || | || | ||||| || || || || Sbjct 42703 AAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGG 42762 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||||||| ||| | | ||||| || || || Sbjct 42763 AATGCCCTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAAC 42822 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | |||| |||||||||||| | ||| || || || |||||||| Sbjct 42823 TTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || |||||| ||||| | || || || |||||||||||||| || | Sbjct 42871 ACCACCACGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGA 42930 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| | |||||| || ||| | || || || |||||||| || || Sbjct 42931 CAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGG 42990 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| ||| ||| | ||| || | || ||||| Sbjct 42991 AATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCAC 43050 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || |||||||| | ||| || || ||||||||||| Sbjct 43051 CTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| | ||| | || || || |||||||||||||| || | Sbjct 49600 ACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGA 49541 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| | ||||||||| ||| | || | || || ||||| || || Sbjct 49540 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGG 49481 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 ||| || || || ||||| || ||| ||| ||| ||| | | |||| |||| |||| Sbjct 49480 AATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGC-TCCA 49422 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || |||| || || ||||| |||||||| Sbjct 49421 CCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| || || ||||||||||| || | Sbjct 42188 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42247 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| || || | || | || |||||||| || ||| Sbjct 42248 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42307 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || ||||| || || ||| ||| ||| | || |||| |||| ||||| Sbjct 42308 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC-TCCAC 42366 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||| || || ||||| |||||||| Sbjct 42367 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| || || |||||||||||||| | Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| || || |||| | || |||||||| || ||| Sbjct 42476 AAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGA 42535 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || ||| | | |||| | ||||| Sbjct 42536 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 42595 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| || || || ||||| Sbjct 42596 TCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| || || ||||||||||| || | Sbjct 41732 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 41791 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| || || | || | || |||||||| || ||| Sbjct 41792 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 41851 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || ||||| || || ||| ||| ||| | || |||| |||| ||||| Sbjct 41852 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC-TCCAC 41910 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || || || || ||||| Sbjct 41911 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| | |||| |||||| || || ||||||||||| || | Sbjct 41960 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42019 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| || || | || | || |||||||| || ||| Sbjct 42020 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42079 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCAC 64395 || || || || ||||| || || ||| ||| ||| | || |||| |||| ||||| Sbjct 42080 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC-TCCAC 42138 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || || | || || || || || ||||| Sbjct 42139 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| |||||||| || || ||||||||||| | | || || | || Sbjct 41518 AAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATC 41577 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||||||| ||| | || | || || ||||| || ||||| || || || || Sbjct 41578 TTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTC 41637 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGG 64409 ||| || || ||| ||| ||| | || |||| |||| ||||| || | || | | Sbjct 41638 TTGAATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGC-TCCACCTCCAGCGTAATAG 41696 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || || | || || || || || ||||| Sbjct 41697 TCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| || |||| || || || |||||||||||||| || | Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||| ||||| ||| | || | |||||||| || || || Sbjct 49311 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 49252 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || ||| | | ||||| | || || Sbjct 49251 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACC 49192 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||| | || || ||||| |||||||| Sbjct 49191 TCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 >seq7336 Length=62802 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || ||||| | || || || |||||||| || || || | | Sbjct 18547 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAG 18606 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| ||| |||| || | |||||| ||||| | || ||||| || || || || || Sbjct 18607 AGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 18666 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| ||||| |||||| ||||| ||| | | ||||| | || || Sbjct 18667 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCACTTGGCTCAACC 18726 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | |||| ||| || || || | ||| || || |||||||||||| Sbjct 18727 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774 >seq1473 Length=538379 Score = 89.7 bits (98), Expect = 5e-13 Identities = 171/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 153689 GATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTT 153748 ||| | ||| || || || |||| |||| ||||||||| || ||||| | |||||||| Sbjct 275951 GATAGGATCGGCAGCAGGCCTAGTGCGCAGATAATACATCCCCGTTTTGAGTCCACGTTT 275892 Query 153749 CCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTT 153808 ||| | || | |||| || || | | || | |||||| | || ||| ||| Sbjct 275891 CCAGGCGTAGAAATGCATACTCGTGATTTTACCGTAGTTGGGCTCCTTCATGTACAGGTT 275832 Query 153809 AAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAG---TT 153865 | ||||||||||| || ||||| | | ||||| || |||| |||| || || Sbjct 275831 GAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCCA----AATCGAGTATTT 275776 Query 153866 TTTACT-GCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGAT 153924 ||| || | || ||||| || |||||||||| || || | ||| || || || | || Sbjct 275775 TTTTCTGGGGTATCTCCCAAACTGTTTTGTAGAGAGCCTTGAGGTCTTCTGGAATTCCAT 275716 Query 153925 CAATTTTCTG 153934 |||| | ||| Sbjct 275715 CAATATCCTG 275706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499562789551640