Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 91.5 1e-13
>seq1473
Length=538379
Score = 91.5 bits (100), Expect = 1e-13
Identities = 281/432 (65%), Gaps = 6/432 (1%)
Strand=Plus/Plus
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
||| | || || || || || || ||||| || || |||||||| ||||| ||
Sbjct 274081 GCCTCACCCACTCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTG 274140
Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
| || | || | |||| ||| || || | |||| ||||| | |||||
Sbjct 274141 CTTACAATGAAAGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTG 274200
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071
||||| ||| ||||||| || ||||| ||| ||| ||| | | || || | | |
Sbjct 274201 ATCTCGAAAAACGCGGGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACG 274260
Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131
| ||| || |||||||| |||||||| || || || ||||| ||||||||||||
Sbjct 274261 TTTATCGCTGGAACCAATGGGGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAAC 274320
Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191
| | | || || || || || ||||| || | | ||| | || || |||||
Sbjct 274321 AGCACCGCTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTAT 274380
Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251
||||| || ||||| |||| || | | || | || | || ||||| ||| | |
Sbjct 274381 CTCGAACCATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAA-CACTG--GC 274437
Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308
| | ||||| | || | || |||||| ||| || ||||| || || || || |||
Sbjct 274438 GCTGAGGAGATTCGCGCTCGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATG 274497
Query 94309 AAACGCGTCGAG 94320
|| || || |||
Sbjct 274498 AAGCGAGTTGAG 274509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494641997370760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |