Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1473 91.5 1e-13 >seq1473 Length=538379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 281/432 (65%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || || || || ||||| || || |||||||| ||||| || Sbjct 274081 GCCTCACCCACTCTTTTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTG 274140 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | || | |||| ||| || || | |||| ||||| | ||||| Sbjct 274141 CTTACAATGAAAGACGACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTG 274200 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| ||| ||||||| || ||||| ||| ||| ||| | | || || | | | Sbjct 274201 ATCTCGAAAAACGCGGGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACG 274260 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 | ||| || |||||||| |||||||| || || || ||||| |||||||||||| Sbjct 274261 TTTATCGCTGGAACCAATGGGGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAAC 274320 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | | || || || || || ||||| || | | ||| | || || ||||| Sbjct 274321 AGCACCGCTCGTTATGTCGATCAGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTAT 274380 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 ||||| || ||||| |||| || | | || | || | || ||||| ||| | | Sbjct 274381 CTCGAACCATGGCATCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAA-CACTG--GC 274437 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 | | ||||| | || | || |||||| ||| || ||||| || || || || ||| Sbjct 274438 GCTGAGGAGATTCGCGCTCGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATG 274497 Query 94309 AAACGCGTCGAG 94320 || || || ||| Sbjct 274498 AAGCGAGTTGAG 274509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494641997370760