Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7336 111 2e-19 seq1039 89.7 5e-13 >seq7336 Length=62802 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||||||||| || |||||| | || ||| |||||| | || ||||||| Sbjct 18578 TTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGG 18637 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || || ||||| || || ||||| || |||||||| ||||||| ||||| Sbjct 18638 CGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA 18697 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | || || | | ||| ||||| | || | ||||| ||||| ||||| | Sbjct 18698 CGTTCTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCT 18757 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 18758 TAACAAAAATTTGCAT 18773 >seq1039 Length=57342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||||| || || || | | |||||||| ||||||||||||||| Sbjct 41731 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 41790 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | |||| | || || ||||| || || Sbjct 41791 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 41850 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | | ||| ||| |||||| Sbjct 41851 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 41910 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | ||| | || || ||||| || || || ||||| ||||||||| Sbjct 41911 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||||| || || || | | |||||||| ||||||||||||||| Sbjct 41959 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 42018 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | |||| | || || ||||| || || Sbjct 42019 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42078 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | | ||| ||| |||||| Sbjct 42079 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42138 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | ||| | || || ||||| || || || ||||| ||||||||| Sbjct 42139 CTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | ||||||||||||||||||||||||| || || || || || | || Sbjct 42895 ATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTG 42954 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || || | | |||| || || || |||||||| || || || || ||||| ||| | | Sbjct 42955 CTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTC-TTGAATCT 43013 Query 138531 TTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 | | || | | || | |||||| | | |||||||| | ||| | ||||| || | Sbjct 43014 TCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGG 43073 Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || |||||||| ||||| Sbjct 43074 TTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || ||||| || | || | || ||||| | |||||||||||||||||||||||||| Sbjct 49602 CAACCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCG 49543 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || || || || || | || || || | | |||| | || |||||||| || Sbjct 49542 GACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGT 49483 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || || || ||||| ||| | |||| || | | || | | ||| ||| ||| Sbjct 49482 GGAATGCCCTCCTTGTC-TTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTC 49424 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| | ||| | || || |||||||| || || || || || |||||| Sbjct 49423 CACCTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||||| || || || | | |||||||| ||||||||||||||| Sbjct 42187 GCCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 42246 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | |||| | || || ||||| || || Sbjct 42247 CAAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGG 42306 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | | ||| ||| |||||| Sbjct 42307 AATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCAC 42366 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | ||| | || || |||||||| || || || || || |||||| Sbjct 42367 CTCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 42415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496180944730320