Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7336 109 4e-19 seq7000 100 2e-16 seq1039 98.7 7e-16 >seq7336 Length=62802 Score = 109 bits (120), Expect = 4e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| ||||| | ||||| ||| | ||| || || || || ||||| || || || ||| Sbjct 18545 TGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGG 18604 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | |||| ||||| || || || ||| | || | || ||||| || || Sbjct 18605 AGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTG 18664 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| || ||||| ||||| |||||| | || || | ||| || || | Sbjct 18665 GTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCACTTGGCTCAA 18724 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTTG 15181 | || | ||| |||||||| || || ||||| || ||||||||||||| |||||| Sbjct 18725 CCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATTATTTG 18779 >seq7000 Length=1252665 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || || || || |||||||| | | || | || | || || ||||| Sbjct 319601 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTC-CATCCTCCAATTG 319659 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | || | |||||||||||| ||||| || |||||||| ||| || Sbjct 319660 CTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTT 319719 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || |||| |||| | ||| || || | || || ||||| || || Sbjct 319720 AGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGT 319779 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||||||| ||||| Sbjct 319780 AAGAGTTTTCACAAAAATCTGCAT 319803 >seq1039 Length=57342 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| ||||| || || ||| | | ||||||| || || Sbjct 42668 TGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGC 42727 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||||||||||||| || |||||| || ||||| || || || Sbjct 42728 TTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTC 42787 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||| | || || | ||| || ||| || || | || ||||| || || || Sbjct 42788 GCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTT 42847 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| ||||||||| Sbjct 42848 AGAGTCTTGACAAAGATTTGCATA 42871 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || | ||||| || || || ||||| |||||||| ||| Sbjct 49373 TGCCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGG 49314 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| || ||||||||||| | ||||||||||| || || || Sbjct 49313 AAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTG 49254 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||| ||| || || | || || | ||| ||| || | Sbjct 49253 GGATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAA 49194 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || || || || |||||||| Sbjct 49193 CCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| ||| | | | ||||| || || Sbjct 41528 TGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGC 41587 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | ||||| || |||||||| |||||| || |||||||| ||| || Sbjct 41588 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTC 41647 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | ||||| | || || || || || | ||||| || || || || Sbjct 41648 GCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTT 41707 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 41708 AGCGTCTTCACAAATATCTGCAT 41730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357334805106335