Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1039 107 2e-18 seq7336 96.9 3e-15 seq7000 95.1 1e-14 seq7187 86.0 6e-12 >seq1039 Length=57342 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| ||||| || || |||||||||||||| || || || | Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA--G 31585 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| ||||| || ||||| || | |||| ||||||||||| || | Sbjct 31586 ACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTG 31645 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||||||||| ||||||||||| || || | |||| | || | ||| | Sbjct 31646 GAATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCA 31705 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | || || || | ||||||||||||||||| || || || || ||||| ||| || Sbjct 31706 CCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATTCCGCCAC 31762 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||| |||||||| || || || || | ||| | ||| || Sbjct 42889 CACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTC 42948 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | || | |||||||||||||| |||||||| || || ||||| Sbjct 42949 CAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 43008 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | || | |||||| | || || || || || | ||||| Sbjct 43009 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTT 43068 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 |||||||||||| || |||||||||||||||| Sbjct 43069 GCCGGTTAGAGTCTTCACAAAAATTTGCATCG 43100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || ||||| || || || ||||| | ||| | ||| |||| || Sbjct 42440 TGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCCAGCTGC 42499 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | ||||||||||||||||| || |||||||| || |||||||| || || Sbjct 42500 TTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTC 42559 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | |||| | ||| | ||| || || | || | || ||||| || Sbjct 42560 GCCTTCA-CGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 42618 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| Sbjct 42619 GAGGGTTTTAACAAATATCTGCAT 42642 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| ||||| |||||||| || || || ||| | ||| | ||| || Sbjct 49582 CACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | ||||||||||| ||||| || |||||||| || || ||||| Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 49463 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| ||| || | |||| | ||| | ||| || || || |||| || || Sbjct 49462 AATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 49403 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || |||||||| Sbjct 49402 CCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| ||||| || || |||||||||||||| || || || Sbjct 31981 ATTCCACCACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 32040 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | || ||| ||||| || ||||| || | |||| ||||||||||| | Sbjct 32041 --GACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTG 32098 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | |||||||| || || |||||||| || || | |||| | || | || Sbjct 32099 GTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCT 32158 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 | ||||| || || | |||||||| || | || || || || || |||||| || Sbjct 32159 CCACTTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATCACG 32214 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || |||||||| ||||| || ||||| | || | ||| || Sbjct 41521 CACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTC 41580 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | ||||||||||| ||||| || |||||||| || || ||||| Sbjct 41581 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 41640 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | |||| | ||| | ||| || || || |||| || || Sbjct 41641 AATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 41700 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || ||||| || ||||| Sbjct 41701 CCCAGTTAGCGTCTTCACAAATATCTGCAT 41730 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || ||||| || || || || ||| | ||| | ||| || | || Sbjct 41756 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGC 41815 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | ||||||||||||||||| || |||||||| || || ||||| || || Sbjct 41816 TTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTC 41875 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| | ||| | ||| || || || |||| || || || ||| Sbjct 41876 GCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTT 41935 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 41936 AGCGTCTTCACAAATATCTGCAT 41958 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || ||||| || || || || ||| | ||| | ||| || | || Sbjct 41984 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGC 42043 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | ||||||||||||||||| || |||||||| || || ||||| || || Sbjct 42044 TTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTC 42103 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| | ||| | ||| || || || |||| || || || ||| Sbjct 42104 GCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTT 42163 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 42164 AGCGTCTTCACAAATATCTGCAT 42186 >seq7336 Length=62802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 45105 TATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 || || || ||||| || || || | || ||||| || ||||| |||||||| |||||| Sbjct 18538 TACTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTA 18597 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 || ||| || ||| || || || || || || ||| | || | ||||| || Sbjct 18598 TAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 18657 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGA 45283 || || || || || ||||| ||||| |||||| ||| | || | || | || || Sbjct 18658 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCGATGGAATCACT 18716 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||| || || || || | ||||| || || ||||| || |||||||||||||| Sbjct 18717 TGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 18773 >seq7000 Length=1252665 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || ||||| ||||| || ||||| ||||| Sbjct 319577 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 319636 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||||||| || || || | || | || || ||||| |||||| Sbjct 319637 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGA 319696 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || ||||| || || | || | | ||||||| ||||| Sbjct 319697 ATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACC 319756 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | ||||||||||| |||||||| |||||||| ||||| Sbjct 319757 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803 >seq7187 Length=4100 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | ||| ||||| || || |||||||||||||| || || || | Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA--G 673 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| ||||| || ||||| || | |||| ||||||||||| || | Sbjct 674 ACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTG 733 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 ||||||| || || |||||||| || || | |||| | || | ||| | Sbjct 734 GAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCA 793 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 |||| || || | |||||||| || | || || || || || |||||| || Sbjct 794 CTTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATCACG 846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451929009324760