Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 107 2e-18
seq7336 96.9 3e-15
seq7000 95.1 1e-14
seq7187 86.0 6e-12
>seq1039
Length=57342
Score = 107 bits (118), Expect = 2e-18
Identities = 167/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | | ||| ||||| || || |||||||||||||| || || || |
Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA--G 31585
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| | | || ||| ||||| || ||||| || | |||| ||||||||||| || |
Sbjct 31586 ACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTG 31645
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
|||||||||| ||||||||||| || || | |||| | || | ||| |
Sbjct 31646 GAATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCA 31705
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
| || || || | ||||||||||||||||| || || || || ||||| ||| ||
Sbjct 31706 CCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATTCCGCCAC 31762
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| ||||| || ||||| |||||||| || || || || | ||| | ||| ||
Sbjct 42889 CACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTC 42948
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||| || || || || | || | |||||||||||||| |||||||| || || |||||
Sbjct 42949 CAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTG 43008
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||| || || | || | |||||| | || || || || || | |||||
Sbjct 43009 AATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTT 43068
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342
|||||||||||| || ||||||||||||||||
Sbjct 43069 GCCGGTTAGAGTCTTCACAAAAATTTGCATCG 43100
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| ||||| || ||||| || || || ||||| | ||| | ||| |||| ||
Sbjct 42440 TGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCCAGCTGC 42499
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||||||| | ||||||||||||||||| || |||||||| || |||||||| || ||
Sbjct 42500 TTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCTTC 42559
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| | || | |||| | ||| | ||| || || | || | || ||||| ||
Sbjct 42560 GCCTTCA-CGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 42618
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| ||||| || |||||
Sbjct 42619 GAGGGTTTTAACAAATATCTGCAT 42642
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| | |||||| ||||| |||||||| || || || ||| | ||| | ||| ||
Sbjct 49582 CACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||| || || || || | ||||||||||| ||||| || |||||||| || || |||||
Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 49463
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||| ||| || | |||| | ||| | ||| || || || |||| || ||
Sbjct 49462 AATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 49403
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || || || ||||||||
Sbjct 49402 CCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/236 (69%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | ||| ||||| || || |||||||||||||| || || ||
Sbjct 31981 ATTCCACCACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA 32040
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | || ||| ||||| || ||||| || | |||| ||||||||||| |
Sbjct 32041 --GACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTG 32098
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| |||||||| || || |||||||| || || | |||| | || | ||
Sbjct 32099 GTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCT 32158
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344
| ||||| || || | |||||||| || | || || || || || |||||| ||
Sbjct 32159 CCACTTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATCACG 32214
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| || || || || |||||||| ||||| || ||||| | || | ||| ||
Sbjct 41521 CACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTC 41580
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
||| || || || || | ||||||||||| ||||| || |||||||| || || |||||
Sbjct 41581 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 41640
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||| || || | |||| | ||| | ||| || || || |||| || ||
Sbjct 41641 AATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 41700
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || || ||||| || |||||
Sbjct 41701 CCCAGTTAGCGTCTTCACAAATATCTGCAT 41730
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| ||||| || ||||| || || || || ||| | ||| | ||| || | ||
Sbjct 41756 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGC 41815
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||||||| | ||||||||||||||||| || |||||||| || || ||||| || ||
Sbjct 41816 TTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTC 41875
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| | |||| | ||| | ||| || || || |||| || || || |||
Sbjct 41876 GCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTT 41935
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| || || ||||| || |||||
Sbjct 41936 AGCGTCTTCACAAATATCTGCAT 41958
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| ||||| || ||||| || || || || ||| | ||| | ||| || | ||
Sbjct 41984 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGC 42043
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||||||| | ||||||||||||||||| || |||||||| || || ||||| || ||
Sbjct 42044 TTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCTTC 42103
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| | |||| | ||| | ||| || || || |||| || || || |||
Sbjct 42104 GCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTT 42163
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| || || ||||| || |||||
Sbjct 42164 AGCGTCTTCACAAATATCTGCAT 42186
>seq7336
Length=62802
Score = 96.9 bits (106), Expect = 3e-15
Identities = 165/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 45105 TATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164
|| || || ||||| || || || | || ||||| || ||||| |||||||| ||||||
Sbjct 18538 TACTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTA 18597
Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224
|| ||| || ||| || || || || || || ||| | || | ||||| ||
Sbjct 18598 TAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 18657
Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGA 45283
|| || || || || ||||| ||||| |||||| ||| | || | || | || ||
Sbjct 18658 TCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA-CGTTCTCGATGGAATCACT 18716
Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||| || || || || | ||||| || || ||||| || ||||||||||||||
Sbjct 18717 TGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCAT 18773
>seq7000
Length=1252665
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| || || || ||||| ||||| || ||||| |||||
Sbjct 319577 CCACCACGGAGGCGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGAT 319636
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| |||||||| || || || | || | || || ||||| ||||||
Sbjct 319637 AAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGA 319696
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || || || || ||||| || || | || | | ||||||| |||||
Sbjct 319697 ATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACC 319756
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| | ||||||||||| |||||||| |||||||| |||||
Sbjct 319757 TCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGCAT 319803
>seq7187
Length=4100
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | | ||| ||||| || || |||||||||||||| || || || |
Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCA--G 673
Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
|| | | || ||| ||||| || ||||| || | |||| ||||||||||| || |
Sbjct 674 ACAATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTG 733
Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291
||||||| || || |||||||| || || | |||| | || | ||| |
Sbjct 734 GAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCA 793
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344
|||| || || | |||||||| || | || || || || || |||||| ||
Sbjct 794 CTTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATCACG 846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451929009324760
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