Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq11759 104 3e-17 >seq11759 Length=791511 Score = 104 bits (114), Expect = 3e-17 Identities = 339/521 (65%), Gaps = 12/521 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| || ||||| || ||| || ||||| ||| || || Sbjct 466076 GCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCA 466135 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||||||||| | | |||||| ||||| ||||| | Sbjct 466136 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATACG 466195 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTAT---CA 127696 || || || |||||||| | ||||||||||| | || | | |||| ||| || Sbjct 466196 CCTTCAACGGCAGCGAACGCCACCAGACGCTCGGC---GTAGGGTGCCTTTTTATTTGCA 466252 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||| | | |||||| | ||||| || | | ||| || | || || || || | | Sbjct 466253 ATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTA 466312 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 || || | ||| |||||| |||| ||| |||| || || || || || Sbjct 466313 AACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATT 466372 Query 127817 TCGCCGTGGACCATTTCATTATGGC-ACT--GATACGCGTAGAAAGAGCGCGCTTCGCTT 127873 || || | |||| | ||| ||| || | | || ||| | || || ||| Sbjct 466373 TCAGAATGAATGTTTTC--GACGGCGACTTGCATTC-CATAAAAACAACGAGCCTCGGGA 466429 Query 127874 ATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933 || || ||||| | |||||| | | | ||| ||| ||| || ||||| | Sbjct 466430 ATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCT 466489 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAG 127993 || || || |||| || |||| ||||| | |||| || || ||| | | |||| Sbjct 466490 GCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCAG 466549 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || ||||||||| | ||||| || ||||| | ||||| Sbjct 466550 TCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCA 466590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613406500461960