Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 154 3e-32
seq7336 105 2e-17
seq7187 105 2e-17
seq7000 102 2e-16
>seq1039
Length=57342
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || ||||| ||||| || ||||||||||| | ||||||||||| || |||
Sbjct 42878 CGAAGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTC 42937
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| |||||| || || ||||| || || ||||||||||| ||| ||
Sbjct 42938 CGACCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCC 42997
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| |||||| || | ||||| | | ||| || |||| |
Sbjct 42998 TCCTTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGC 43057
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || ||||| ||||||||||||||
Sbjct 43058 GTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTG 43095
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || | ||| || ||||||||||| || | |||||| |||| ||| || | |||||
Sbjct 42430 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATC 42489
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||||| ||||| || | || |||||||| || ||| || || ||
Sbjct 42490 CTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTATC 42549
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||||||| || | | ||| ||| || || ||||| ||||| ||
Sbjct 42550 TTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGATGGT 42609
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || ||||| ||||| ||||| || ||
Sbjct 42610 CTTGCCAGTGAGGGTTTTAACAAATATCTG 42639
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || ||||| || || || || |||||||||| ||||||||||| ||| ||
Sbjct 31534 CGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTA 31593
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||||||| || ||||| || || |||||||| || ||| |||
Sbjct 31594 CGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCT 31653
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || |||||||| |||||| || | | || | | || || ||||
Sbjct 31654 TCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGT 31713
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || ||||| ||||| || || ||
Sbjct 31714 GTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTG 31751
Score = 105 bits (116), Expect = 2e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || ||||| || || || || |||||||||| ||||||||||| ||| ||
Sbjct 31990 CGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTA 32049
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||||||| || ||||| || || |||||||| || ||| ||
Sbjct 32050 CGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCC 32109
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554
|| || |||||||| ||||||
Sbjct 32110 TCCTTGTCTTGAATCTTCGCCTTCAC 32135
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| |||| || || ||||| || || ||||||||||| | ||| ||||||| | |||
Sbjct 42650 CGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTG 42709
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||||| |||||| || |||||||| | |||||| || || || ||| ||
Sbjct 42710 CGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCC 42769
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || || | | || | | ||| || |||| |
Sbjct 42770 TCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGC 42829
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || ||||| || ||||| |||||
Sbjct 42830 GTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTG 42867
Score = 104 bits (114), Expect = 6e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || | ||| || ||||||||||| || | ||||||||| | ||| || | |||||
Sbjct 41746 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 41805
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|| ||||||||||| |||||||| | || |||||||| || ||| || || ||
Sbjct 41806 CTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 41865
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| |||||| || | | ||| | | || || |||| ||| || ||
Sbjct 41866 TTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGT 41925
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || |||||||| || ||
Sbjct 41926 CTTCCCAGTTAGCGTCTTCACAAATATCTG 41955
Score = 104 bits (114), Expect = 6e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || | ||| || ||||||||||| || | ||||||||| | ||| || | |||||
Sbjct 41974 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 42033
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|| ||||||||||| |||||||| | || |||||||| || ||| || || ||
Sbjct 42034 CTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 42093
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| |||||| || | | ||| | | || || |||| ||| || ||
Sbjct 42094 TTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGT 42153
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || |||||||| || ||
Sbjct 42154 CTTCCCAGTTAGCGTCTTCACAAATATCTG 42183
Score = 104 bits (114), Expect = 6e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| || | ||| || ||||||||||| || | ||||||||| | ||| || | |||||
Sbjct 42202 CAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATC 42261
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|| ||||||||||| |||||||| | || |||||||| || ||| || || ||
Sbjct 42262 CTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 42321
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| |||||| || | | ||| | | || || |||| ||| || ||
Sbjct 42322 TTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGT 42381
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || ||||| || |||||
Sbjct 42382 CTTCCCAGTCAGGGTCTTCACGAATATTTG 42411
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| ||||| ||||||||||| | ||||||||| | || || | |||||||||| ||||
Sbjct 49575 TGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGC 49516
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || ||||| | || || ||||| || ||| || || || |||||||||
Sbjct 49515 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 49456
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
|||||| || | | ||| | | || || |||| ||| || ||||| || ||
Sbjct 49455 GCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTC 49396
Query 199607 AGAGTTTTCACAAAAATTTG 199626
|| || ||||| || |||||
Sbjct 49395 AGGGTCTTCACGAATATTTG 49376
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || || ||||||||||| | ||||||||| | | ||| | ||||||
Sbjct 49356 AGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCT 49297
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| ||| || || || ||||| | ||||||||| ||||| || || || ||
Sbjct 49296 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCT 49237
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| || | | || | | || || || | ||||| |||
Sbjct 49236 TGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTC 49177
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || |||||
Sbjct 49176 TTCCCGGTAAGCGTCTTCACGAAGATTTG 49148
>seq7336
Length=62802
Score = 105 bits (116), Expect = 2e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| ||||| || ||||| ||||| || ||||||||||| | || ||||| | | ||
Sbjct 18552 TCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGT 18611
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
|| || || || | |||||| ||||||||||| || || || || || || |||||
Sbjct 18612 CCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCC 18671
Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586
||| || || || |||||| || ||| |||| || || ||| || || || |
Sbjct 18672 CTCTTTGTCTTGGAT-TTTTGCTTTTACGTTCTCGATGGAATCACTTGGCTCAACCTCAA 18730
Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || |||||||| || |||||||||||
Sbjct 18731 GGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTG 18770
>seq7187
Length=4100
Score = 105 bits (116), Expect = 2e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || ||||| || || || || |||||||||| ||||||||||| ||| ||
Sbjct 622 CGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTA 681
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| ||||||||| || ||||| || || |||||||| || ||| ||
Sbjct 682 CGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCC 741
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554
|| || |||||||| ||||||
Sbjct 742 TCCTTGTCTTGAATCTTCGCCTTCAC 767
>seq7000
Length=1252665
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| |||||||| || || |||||||| || | ||||| |||| || | | ||||||
Sbjct 319592 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCC 319651
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| ||||| || || || || |||||||| ||||| || ||| || || |||
Sbjct 319652 TCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCC 319711
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| |||||| || | | || | | ||| || || | ||||| ||
Sbjct 319712 TGAATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTT 319771
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || ||||||||||||||||| ||
Sbjct 319772 TTGCCGGTAAGAGTTTTCACAAAAATCTG 319800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178723257124777
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