Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq7336 123 2e-23
seq1039 122 9e-23
>seq7336
Length=62802
Score = 123 bits (136), Expect = 2e-23
Identities = 161/220 (73%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298
||| ||||||||| || || || || ||||| || |||||||| ||| | || || |||
Sbjct 18778 AAATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGC 18719
Query 38299 CCACCGA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG 38355
| | || || || | |||| | |||| |||||||| |||||||||||||| ||
Sbjct 18718 CAAGTGATTCCATCGAG--AACG-TAAAAGCAAAAATCCAAGACAAAGAGGGAATACCAC 18662
Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415
| || ||||| ||||| || | ||| || || ||| | || |||| ||| |||||| ||
Sbjct 18661 CAGATCAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCG 18602
Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455
|||| || || |||||||| | || || ||| | || ||
Sbjct 18601 ACTATAATATTCAAAAGGAGTCAACACTCCATCTTGTTCT 18562
>seq1039
Length=57342
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| ||||| || ||||| ||||| ||||| ||||||||| | || || ||| | |
Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | | |||| | || | || |||| || || ||||| ||||| | |||||
Sbjct 42582 GACTCGATAGAGAACG-TGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCA 42524
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | |||| ||| || || |||||||| || | |||||| | || |||||
Sbjct 42523 GCAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATTACAA 42464
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| || ||||| ||||||| || ||||||||||||||| | || |||
Sbjct 42463 CATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42415
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| || || || || || || || || || | || || ||| | |
Sbjct 42414 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42355
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| | | | | || | || |||| ||||| ||||| ||||| | |||||
Sbjct 42354 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42295
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | ||| || || ||||| || || | |||||| | ||||||||||
Sbjct 42294 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42235
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|| || ||||| ||||||| || ||||||||||||||| | || |||
Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42187
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| || || || || || || || || || | || || ||| | |
Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| | | | | || | ||| || | ||||| ||||| ||||| | ||||||
Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 49492
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || ||||| ||| |||| || | |||||||| ||||||||||
Sbjct 49493 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 49552
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| |||||||| | || |||||||||||||| ||
Sbjct 49553 ATTCAAAAGGAGTCAACTCTGCATTTGGTGCTTCG 49587
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| ||||| || || ||||| || || || || || || | || || ||| | |
Sbjct 41958 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41899
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| | | | | || | || |||| ||||| ||||| ||||| | |||||
Sbjct 41898 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 41839
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | ||| || || ||||| || || | |||||| | ||||||||||
Sbjct 41838 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 41779
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|| || ||||| ||||||| || ||||||||||||||| | || |||
Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41731
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| ||||| || || ||||| || || || || || || | || || ||| | |
Sbjct 42186 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42127
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| | | | | || | || |||| ||||| ||||| ||||| | |||||
Sbjct 42126 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42067
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | ||| || || ||||| || || | |||||| | ||||||||||
Sbjct 42066 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42007
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|| || ||||| ||||||| || ||||||||||||||| | || |||
Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41959
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| || || || || |||||| |||| || ||| | |
Sbjct 49145 ATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 49204
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | || |||| | || | || || | ||||| ||||| || || | || ||
Sbjct 49205 GATTCGATTGAGAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCA 49263
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | || ||||||||| |||| || | ||||| || |||||||||
Sbjct 49264 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAA 49323
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| |||||||| | || || || ||||||| ||| || | || |||
Sbjct 49324 CATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGGC 49372
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || || |||||||| ||||| | || || || ||| |
Sbjct 43098 ATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGC 43039
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || | || || | ||||| ||||| ||||| | |||||
Sbjct 43038 GACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAG 42979
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||||| || ||| |||| || | || ||||| |||||||||
Sbjct 42978 CAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAAC 42919
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| |||||||| | || || ||| | ||||| ||
Sbjct 42918 ATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCG 42884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500090702887040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |