Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq12962 192 2e-43
seq7336 109 2e-18
seq6307 98.7 4e-15
seq8799 95.1 5e-14
seq5041 95.1 5e-14
seq7919 93.3 2e-13
seq6391 93.3 2e-13
seq1039 86.0 2e-11
>seq12962
Length=275956
Score = 192 bits (212), Expect = 2e-43
Identities = 264/366 (72%), Gaps = 6/366 (2%)
Strand=Plus/Minus
Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297
|| || || || || |||| |||||||||||| ||||||||| |||| || ||
Sbjct 130055 TTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCTGAGGCC 129996
Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357
||| |||| || ||||||| |||| || | ||||| || || || |||||||| ||
Sbjct 129995 TATCTTGGCACTGCAGTTACGCATGCTGTTGTCACTGTGCCTGCCTACTTCAATGACGCC 129936
Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417
||||| ||||||||||||||||| || ||||||||| | | || | || |||||
Sbjct 129935 CAACGTCAAGCAACTAAAGATGCTGGTGCCATTGCTGGTCTGACCGTGTTGCGGATTATC 129876
Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477
|||||||| || |||||||| | || ||||| | ||| || |||||| || |||
Sbjct 129875 AATGAACCAACCGCAGCTGCGATCGCCTATGG-GTTGGACAA--AAAAGACAC---TGAA 129822
Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537
|| ||||| | || |||||| | ||||| || || ||| || | || ||||
Sbjct 129821 AAGAATATCCTCGTGTTTGATCTGGGTGGTGGCACCTTCGATGTCTCCCTCCTGACAATC 129762
Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597
|| |||| || |||||||| || |||| |||||| |||||||| || ||||||||
Sbjct 129761 GACAATGGTGTGTTTGAAGTTGTTGCGACCAGTGGTGACACTCATCTTGGTGGTGAAGAC 129702
Query 451598 ATTGAT 451603
|||||
Sbjct 129701 TTTGAT 129696
>seq7336
Length=62802
Score = 109 bits (120), Expect = 2e-18
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106
|||||| | ||||| ||||| || || ||||| ||||| || || ||||| ||||| ||
Sbjct 18776 ATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCA 18717
Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166
|||| ||| || | ||| |||||| ||||| || || ||||| || || |||
Sbjct 18716 AGTGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGAT 18657
Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226
|||||||| | || ||| | || || || | || || || | || | | || |||
Sbjct 18656 CAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTAT 18597
Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274
|||||| | ||||| ||||||| || | || ||||||| |||||
Sbjct 18596 AATATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGA 18549
>seq6307
Length=230001
Score = 98.7 bits (108), Expect = 4e-15
Identities = 348/533 (65%), Gaps = 18/533 (3%)
Strand=Plus/Plus
Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972
||| ||||| || || | || || || || || ||||| ||||| | ||| | || ||
Sbjct 29261 AGCCATTGGCATCGACTTAGGCACAACTTTCTCGTGTGTTGGTGTCTTTCAAGACGGCAA 29320
Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----T 451028
|||||||| || || || || ||||| | ||||| || || || | || || |
Sbjct 29321 GGTAGAAATAATTGCCAACGATCAAGGTTATCGAACAACGCC--CA--GTTATGTGGCCT 29376
Query 451029 TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGC 451086
| ||||| |||| ||| | || | |||| || |||| || | | || |
Sbjct 29377 TCACGGAAAAAGAACCTCTTATCGGTGATTCTGCAAAGAATCA--GGCAGCTCTGAACCC 29434
Query 451087 CAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGT 451146
| ||||| || | ||| | || ||| | ||||| ||| | |||| | || ||
Sbjct 29435 GACTAACACGGTTTTTGACGTGAAGCGTCTGATTGGACGTTATTTCAATGACAAGACAGT 29494
Query 451147 ACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAAT-CAAAAAGGAAAGCCCTATA 451205
||| || | || | || | | | | || |||||| | ||||||| || || |
Sbjct 29495 GCAAGGTGATATGAAGTACTGGCCGTTTAAAGTGGTAAATTCTGGAAGGAAA-CCATA-A 29552
Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTT-GCTCCTGAAGAAATTTCATCTATG 451264
|| | ||| | || ||||| |||| | || | ||| || || || || |||||
Sbjct 29553 TTGAGGTAGAGTACCGCGGTGAG--TAAAGCAGTTCGTTCCGGAGGAGATCTCGGCTATG 29610
Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324
|| |||| |||||||| ||||| || ||| ||| | || ||| || | ||
Sbjct 29611 GTGCTTATGAAAATGAAGGAAACGGCGGAAGCTTATTTGGGCAAGGAAGTGACAAACGCG 29670
Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384
|| || || || || || |||||||||||| || | ||||| || | || ||||||
Sbjct 29671 GTGATCACGGTACCAGCGTATTTCAATGATAGCCAGTGTCAAGCGACGATGGACGCAGGA 29730
Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
| || |||||||| ||||| | || ||||||||||| || || || |||||
Sbjct 29731 AAAATCGCTGGTTTGAATGTATTACGCATTATTAATGAGCCAACGGCTGCTGC 29783
>seq8799
Length=129867
Score = 95.1 bits (104), Expect = 5e-14
Identities = 342/524 (65%), Gaps = 12/524 (2%)
Strand=Plus/Plus
Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979
|| || ||| | || || || || || || || || || | ||| |||| || || ||
Sbjct 10833 GGTATCGATTTGGGGACGACTTTCTCCTGCGTTGGCGTGTTTCAACATGGCAAGGTGGAG 10892
Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039
|| || || |||||||| || || ||||| || | || ||||||||| ||
Sbjct 10893 ATAATCGCCAATGACCAGGGCAATCGTACTACACCGAGTTATGTCGCCTTTACGGATACA 10952
Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACACAG 451097
|| | || | || | |||||||| |||| |||| ||| | | ||||| |
Sbjct 10953 GAGCGTCTCATTGGTGATGCTGCTAAGAATCA--GGTAGCCATGAATCCTAGCAACACGG 11010
Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGA 451157
| | ||||| ||||| || ||||| ||| | ||| || | || || |||| || |
Sbjct 11011 TGTTCGATGCCAAACGCTTGATTGGACGTCGTTTTGAAGACAAGACGGTGCAAAGTGACA 11070
Query 451158 AAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATT 451217
|| | | | | | || | ||| ||| ||||| | ||| ||||| | |
Sbjct 11071 TGAAGCATTGGCCCTTTAAAGTGATCAATTCGGGAGGCAAGCCGAAGATTGAAGTAGAGT 11130
Query 451218 ATAAAGGTGAAACTAAA-ACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276
|| ||||| || || | || || | || ||||| || || ||||| || ||||||
Sbjct 11131 ATCGTGGTGAGACCAAGCAATTCAGCGCG-GAGGAAATCTCGTCCATGGTACT-ACTAAA 11188
Query 451277 A-TGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335
| |||| ||||| ||||| || | || || |||||||| || || || ||
Sbjct 11189 AATGAAGGAAACTGCAGAGGCGTACTTGGGCAAAAAGGTAACTGATGCGGTCATCACGGT 11248
Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-AC-ATATTGCT 451393
|| ||||| ||||| || || || || ||||| || |||||||| || |||| |
Sbjct 11249 GCCGGCTTACTTCAACGACAGTCAGCGTCAGGCAACGAAGGATGCAGGCACGATAT--CA 11306
Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
|| | ||||| | || ||||||||||| || |||||||| ||
Sbjct 11307 GGCATGAATGTATTGCGTATTATTAATGAGCCGACAGCAGCCGC 11350
>seq5041
Length=10072
Score = 95.1 bits (104), Expect = 5e-14
Identities = 241/359 (67%), Gaps = 7/359 (2%)
Strand=Plus/Plus
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306
||| | || ||||||||||| || | || ||||| || ||||||| ||| | ||
Sbjct 365 GAACAGATCTCATCTATGGTGCTGTCGAAGATGAAGGAGGCAGCAGAGGCGTATTTGGGC 424
Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366
|| || || || ||||| || || || || || || |||| | ||||||||
Sbjct 425 AAGGAGGTAACAGACGCGGTAATCACAGTGCCAGCGTACTTTAATGTTAATCAACGGCAG 484
Query 451367 GCAACTAAAGATGCAGGACATATTG-CTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|| || | |||||||||| | |||| | || |||||||| | || |||| ||||| ||
Sbjct 485 GCCACAATAGATGCAGGA-AGATTGGCGGGCTTAAATGTGATGCGTCTTATCAATGAGCC 543
Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTAT 451485
|||||||||||| | || || || ||| | | || || || || | ||| |
Sbjct 544 AACAGCAGCTGCTATTGCCTACGGCTTAG--ACAGGAAGAGCGAC-GAGCAGCGCAATGT 600
Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545
| || || ||||| ||||| || ||| |||| || | | || |||| ||| ||
Sbjct 601 GCTCGTCTTCGATTTGGGTGGCGGCACTTTTGATGTGTCCATTTTGTCCATTG-AGAGGG 659
Query 451546 G-GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603
| ||||||||| ||||| ||||| || || | || |||||||| |||||
Sbjct 660 GAAAATTTGAAGTGAAGGCGGTTGGCGGTGACACACACTTGGGTGGTGAAGACTTTGAT 718
>seq7919
Length=65517
Score = 93.3 bits (102), Expect = 2e-13
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293
|||||||| | | || || |||||||| ||||| || || ||||| || | |||| |
Sbjct 63576 AACTTTTGTTGCCGAGGAGATTTCATCCATGGTGCTGCTGAAGATGAAGGAGATAGCAAA 63517
Query 451294 ACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGA 451353
|||| | || || | ||||| ||||| || || || || || ||||||||
Sbjct 63516 GGCATATTTGGGCGGGGAGGTGAGAGATGCGGTAATAACAGTACCGGCATACTTCAATGA 63457
Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413
| || ||||| || || | |||||||||| || || ||||||||||| | || |
Sbjct 63456 TAGCCAGCGGCAGGCGACGATAGATGCAGGAAGAATAGCAGGTTTAAATGTGTTGCGCGT 63397
Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449
| ||||| || |||||||| || | ||||| ||
Sbjct 63396 CGTCAATGAGCCCACAGCAGCCGCCATTGCATACGG 63361
>seq6391
Length=79790
Score = 93.3 bits (102), Expect = 2e-13
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293
|||||||| | | || || |||||||| ||||| || || ||||| || | |||| |
Sbjct 12983 AACTTTTGTTGCCGAGGAGATTTCATCCATGGTGCTGCTGAAGATGAAGGAGATAGCAAA 13042
Query 451294 ACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGA 451353
|||| | || || | ||||| ||||| || || || || || ||||||||
Sbjct 13043 GGCATATTTGGGCGGGGAGGTGAGAGATGCGGTAATAACAGTACCGGCATACTTCAATGA 13102
Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413
| || ||||| || || | |||||||||| || || ||||||||||| | || |
Sbjct 13103 TAGCCAGCGGCAGGCGACGATAGATGCAGGAAGAATAGCAGGTTTAAATGTGTTGCGCGT 13162
Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449
| ||||| || |||||||| || | ||||| ||
Sbjct 13163 CGTCAATGAGCCCACAGCAGCCGCCATTGCATACGG 13198
>seq1039
Length=57342
Score = 86.0 bits (94), Expect = 2e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193
|| || ||||||||||| || ||||| || || || ||||| || |||||| |||| ||
Sbjct 42558 AAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGCAACGATTGATTTTCGCAGGAAAG 42499
Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253
|| || || ||||| | || ||| | ||||| || ||| | ||||| | || ||||||
Sbjct 42498 CAGCTGGAGGATGGTCGCACCTTGTCTGATTACAACATTCAGAAGGAGTCGACGCTTCAC 42439
Query 391254 TTAGT 391258
|| ||
Sbjct 42438 TTGGT 42434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975386003284148
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