Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq12962 192 2e-43 seq7336 109 2e-18 seq6307 98.7 4e-15 seq8799 95.1 5e-14 seq5041 95.1 5e-14 seq7919 93.3 2e-13 seq6391 93.3 2e-13 seq1039 86.0 2e-11 >seq12962 Length=275956 Score = 192 bits (212), Expect = 2e-43 Identities = 264/366 (72%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || || || |||| |||||||||||| ||||||||| |||| || || Sbjct 130055 TTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCTGAGGCC 129996 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| || ||||||| |||| || | ||||| || || || |||||||| || Sbjct 129995 TATCTTGGCACTGCAGTTACGCATGCTGTTGTCACTGTGCCTGCCTACTTCAATGACGCC 129936 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| ||||||||||||||||| || ||||||||| | | || | || ||||| Sbjct 129935 CAACGTCAAGCAACTAAAGATGCTGGTGCCATTGCTGGTCTGACCGTGTTGCGGATTATC 129876 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 |||||||| || |||||||| | || ||||| | ||| || |||||| || ||| Sbjct 129875 AATGAACCAACCGCAGCTGCGATCGCCTATGG-GTTGGACAA--AAAAGACAC---TGAA 129822 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || ||||| | || |||||| | ||||| || || ||| || | || |||| Sbjct 129821 AAGAATATCCTCGTGTTTGATCTGGGTGGTGGCACCTTCGATGTCTCCCTCCTGACAATC 129762 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || |||| || |||||||| || |||| |||||| |||||||| || |||||||| Sbjct 129761 GACAATGGTGTGTTTGAAGTTGTTGCGACCAGTGGTGACACTCATCTTGGTGGTGAAGAC 129702 Query 451598 ATTGAT 451603 ||||| Sbjct 129701 TTTGAT 129696 >seq7336 Length=62802 Score = 109 bits (120), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 |||||| | ||||| ||||| || || ||||| ||||| || || ||||| ||||| || Sbjct 18776 ATAATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCA 18717 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 |||| ||| || | ||| |||||| ||||| || || ||||| || || ||| Sbjct 18716 AGTGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGAT 18657 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 |||||||| | || ||| | || || || | || || || | || | | || ||| Sbjct 18656 CAACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTAT 18597 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 |||||| | ||||| ||||||| || | || ||||||| ||||| Sbjct 18596 AATATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGA 18549 >seq6307 Length=230001 Score = 98.7 bits (108), Expect = 4e-15 Identities = 348/533 (65%), Gaps = 18/533 (3%) Strand=Plus/Plus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 ||| ||||| || || | || || || || || ||||| ||||| | ||| | || || Sbjct 29261 AGCCATTGGCATCGACTTAGGCACAACTTTCTCGTGTGTTGGTGTCTTTCAAGACGGCAA 29320 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----T 451028 |||||||| || || || || ||||| | ||||| || || || | || || | Sbjct 29321 GGTAGAAATAATTGCCAACGATCAAGGTTATCGAACAACGCC--CA--GTTATGTGGCCT 29376 Query 451029 TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGC 451086 | ||||| |||| ||| | || | |||| || |||| || | | || | Sbjct 29377 TCACGGAAAAAGAACCTCTTATCGGTGATTCTGCAAAGAATCA--GGCAGCTCTGAACCC 29434 Query 451087 CAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGT 451146 | ||||| || | ||| | || ||| | ||||| ||| | |||| | || || Sbjct 29435 GACTAACACGGTTTTTGACGTGAAGCGTCTGATTGGACGTTATTTCAATGACAAGACAGT 29494 Query 451147 ACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAAT-CAAAAAGGAAAGCCCTATA 451205 ||| || | || | || | | | | || |||||| | ||||||| || || | Sbjct 29495 GCAAGGTGATATGAAGTACTGGCCGTTTAAAGTGGTAAATTCTGGAAGGAAA-CCATA-A 29552 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTT-GCTCCTGAAGAAATTTCATCTATG 451264 || | ||| | || ||||| |||| | || | ||| || || || || ||||| Sbjct 29553 TTGAGGTAGAGTACCGCGGTGAG--TAAAGCAGTTCGTTCCGGAGGAGATCTCGGCTATG 29610 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 || |||| |||||||| ||||| || ||| ||| | || ||| || | || Sbjct 29611 GTGCTTATGAAAATGAAGGAAACGGCGGAAGCTTATTTGGGCAAGGAAGTGACAAACGCG 29670 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || || || |||||||||||| || | ||||| || | || |||||| Sbjct 29671 GTGATCACGGTACCAGCGTATTTCAATGATAGCCAGTGTCAAGCGACGATGGACGCAGGA 29730 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 | || |||||||| ||||| | || ||||||||||| || || || ||||| Sbjct 29731 AAAATCGCTGGTTTGAATGTATTACGCATTATTAATGAGCCAACGGCTGCTGC 29783 >seq8799 Length=129867 Score = 95.1 bits (104), Expect = 5e-14 Identities = 342/524 (65%), Gaps = 12/524 (2%) Strand=Plus/Plus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || || ||| | || || || || || || || || || | ||| |||| || || || Sbjct 10833 GGTATCGATTTGGGGACGACTTTCTCCTGCGTTGGCGTGTTTCAACATGGCAAGGTGGAG 10892 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || || |||||||| || || ||||| || | || ||||||||| || Sbjct 10893 ATAATCGCCAATGACCAGGGCAATCGTACTACACCGAGTTATGTCGCCTTTACGGATACA 10952 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACACAG 451097 || | || | || | |||||||| |||| |||| ||| | | ||||| | Sbjct 10953 GAGCGTCTCATTGGTGATGCTGCTAAGAATCA--GGTAGCCATGAATCCTAGCAACACGG 11010 Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGA 451157 | | ||||| ||||| || ||||| ||| | ||| || | || || |||| || | Sbjct 11011 TGTTCGATGCCAAACGCTTGATTGGACGTCGTTTTGAAGACAAGACGGTGCAAAGTGACA 11070 Query 451158 AAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATT 451217 || | | | | | || | ||| ||| ||||| | ||| ||||| | | Sbjct 11071 TGAAGCATTGGCCCTTTAAAGTGATCAATTCGGGAGGCAAGCCGAAGATTGAAGTAGAGT 11130 Query 451218 ATAAAGGTGAAACTAAA-ACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || ||||| || || | || || | || ||||| || || ||||| || |||||| Sbjct 11131 ATCGTGGTGAGACCAAGCAATTCAGCGCG-GAGGAAATCTCGTCCATGGTACT-ACTAAA 11188 Query 451277 A-TGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 | |||| ||||| ||||| || | || || |||||||| || || || || Sbjct 11189 AATGAAGGAAACTGCAGAGGCGTACTTGGGCAAAAAGGTAACTGATGCGGTCATCACGGT 11248 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-AC-ATATTGCT 451393 || ||||| ||||| || || || || ||||| || |||||||| || |||| | Sbjct 11249 GCCGGCTTACTTCAACGACAGTCAGCGTCAGGCAACGAAGGATGCAGGCACGATAT--CA 11306 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || | ||||| | || ||||||||||| || |||||||| || Sbjct 11307 GGCATGAATGTATTGCGTATTATTAATGAGCCGACAGCAGCCGC 11350 >seq5041 Length=10072 Score = 95.1 bits (104), Expect = 5e-14 Identities = 241/359 (67%), Gaps = 7/359 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||| | || ||||||||||| || | || ||||| || ||||||| ||| | || Sbjct 365 GAACAGATCTCATCTATGGTGCTGTCGAAGATGAAGGAGGCAGCAGAGGCGTATTTGGGC 424 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || || || || ||||| || || || || || || |||| | |||||||| Sbjct 425 AAGGAGGTAACAGACGCGGTAATCACAGTGCCAGCGTACTTTAATGTTAATCAACGGCAG 484 Query 451367 GCAACTAAAGATGCAGGACATATTG-CTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 || || | |||||||||| | |||| | || |||||||| | || |||| ||||| || Sbjct 485 GCCACAATAGATGCAGGA-AGATTGGCGGGCTTAAATGTGATGCGTCTTATCAATGAGCC 543 Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTAT 451485 |||||||||||| | || || || ||| | | || || || || | ||| | Sbjct 544 AACAGCAGCTGCTATTGCCTACGGCTTAG--ACAGGAAGAGCGAC-GAGCAGCGCAATGT 600 Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545 | || || ||||| ||||| || ||| |||| || | | || |||| ||| || Sbjct 601 GCTCGTCTTCGATTTGGGTGGCGGCACTTTTGATGTGTCCATTTTGTCCATTG-AGAGGG 659 Query 451546 G-GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 | ||||||||| ||||| ||||| || || | || |||||||| ||||| Sbjct 660 GAAAATTTGAAGTGAAGGCGGTTGGCGGTGACACACACTTGGGTGGTGAAGACTTTGAT 718 >seq7919 Length=65517 Score = 93.3 bits (102), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 |||||||| | | || || |||||||| ||||| || || ||||| || | |||| | Sbjct 63576 AACTTTTGTTGCCGAGGAGATTTCATCCATGGTGCTGCTGAAGATGAAGGAGATAGCAAA 63517 Query 451294 ACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGA 451353 |||| | || || | ||||| ||||| || || || || || |||||||| Sbjct 63516 GGCATATTTGGGCGGGGAGGTGAGAGATGCGGTAATAACAGTACCGGCATACTTCAATGA 63457 Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413 | || ||||| || || | |||||||||| || || ||||||||||| | || | Sbjct 63456 TAGCCAGCGGCAGGCGACGATAGATGCAGGAAGAATAGCAGGTTTAAATGTGTTGCGCGT 63397 Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | ||||| || |||||||| || | ||||| || Sbjct 63396 CGTCAATGAGCCCACAGCAGCCGCCATTGCATACGG 63361 >seq6391 Length=79790 Score = 93.3 bits (102), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 |||||||| | | || || |||||||| ||||| || || ||||| || | |||| | Sbjct 12983 AACTTTTGTTGCCGAGGAGATTTCATCCATGGTGCTGCTGAAGATGAAGGAGATAGCAAA 13042 Query 451294 ACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGA 451353 |||| | || || | ||||| ||||| || || || || || |||||||| Sbjct 13043 GGCATATTTGGGCGGGGAGGTGAGAGATGCGGTAATAACAGTACCGGCATACTTCAATGA 13102 Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413 | || ||||| || || | |||||||||| || || ||||||||||| | || | Sbjct 13103 TAGCCAGCGGCAGGCGACGATAGATGCAGGAAGAATAGCAGGTTTAAATGTGTTGCGCGT 13162 Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | ||||| || |||||||| || | ||||| || Sbjct 13163 CGTCAATGAGCCCACAGCAGCCGCCATTGCATACGG 13198 >seq1039 Length=57342 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||||||||| || ||||| || || || ||||| || |||||| |||| || Sbjct 42558 AAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGCAACGATTGATTTTCGCAGGAAAG 42499 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 || || || ||||| | || ||| | ||||| || ||| | ||||| | || |||||| Sbjct 42498 CAGCTGGAGGATGGTCGCACCTTGTCTGATTACAACATTCAGAAGGAGTCGACGCTTCAC 42439 Query 391254 TTAGT 391258 || || Sbjct 42438 TTGGT 42434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975386003284148