Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 123 3e-23
seq11759 104 3e-17
>seq1473
Length=538379
Score = 123 bits (136), Expect = 3e-23
Identities = 353/538 (66%), Gaps = 15/538 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||||||||||| ||||| ||| |||| ||||| ||||| |||||| | || ||| |
Sbjct 273979 CCTCAGTACATGTTTATGCGCGTCTCGATAGGTATTCATGGTGAAGATGTGGACGCTGCT 274038
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA---TGTTCATCCACGCAACACCAACCCTC 111728
| ||||| || | ||||| || | ||| || ||||| |||| || ||
Sbjct 274039 ATTGAGACCTATAATCTAATGTC---TGAAAAGTGGTTGATTCACGCCTCACCCACTCTT 274095
Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788
|| || ||||| || || || || |||||||| ||||| | || ||| || ||
Sbjct 274096 TTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAAAGAC 274155
Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848
|| ||| | || || || | ||| |||| ||||||| | ||||| || ||
Sbjct 274156 GACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAACGCG 274215
Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908
||||| ||||| | | | || || || ||| || | ||| || ||
Sbjct 274216 GGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACGTTTATCGCTGGAACC 274275
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
||||| | || | ||| || | || |||||||| || || ||| ||| || || |||
Sbjct 274276 AATGGGGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCGCTCGTTAT 274335
Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024
|| | | || ||| | | | || | | || ||||||| || ||||||||
Sbjct 274336 GTCGATC-AGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCA 274394
Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG--GCGCGG 112082
||||| | || |||| | ||||| || ||| || | ||||||| ||||
Sbjct 274395 TCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAGGAGATTCGCGC 274454
Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
| || ||||||||| ||| || ||| |||| ||||| ||||||||| |||||||||
Sbjct 274455 T--CGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATGAAGCGAGTTGAGG 274510
>seq11759
Length=791511
Score = 104 bits (114), Expect = 3e-17
Identities = 173/246 (70%), Gaps = 8/246 (3%)
Strand=Plus/Minus
Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149
|| ||| | ||||| ||||| | || ||| || ||||| || |||||||| | | |
Sbjct 466317 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGG 466258
Query 102150 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206
||| ||| ||| |||| | | ||| || ||||| || | || || || |||
Sbjct 466257 TGGATTGCAAATAAAAAGGCAC---CCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTT 466201
Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265
|| || | ||||| |||||||| || ||| | |||| |||||||||||||| |||||
Sbjct 466200 GAAGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCT 466142
Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325
|||||| || ||| ||| || ||||| ||| ||| ||||| || |||||| ||
Sbjct 466141 CATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGA 466082
Query 102326 GTTTGC 102331
|||||
Sbjct 466081 TTTTGC 466076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620640512894320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |