Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1473 123 3e-23 seq11759 104 3e-17 >seq1473 Length=538379 Score = 123 bits (136), Expect = 3e-23 Identities = 353/538 (66%), Gaps = 15/538 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||||||||| ||||| ||| |||| ||||| ||||| |||||| | || ||| | Sbjct 273979 CCTCAGTACATGTTTATGCGCGTCTCGATAGGTATTCATGGTGAAGATGTGGACGCTGCT 274038 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA---TGTTCATCCACGCAACACCAACCCTC 111728 | ||||| || | ||||| || | ||| || ||||| |||| || || Sbjct 274039 ATTGAGACCTATAATCTAATGTC---TGAAAAGTGGTTGATTCACGCCTCACCCACTCTT 274095 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 || || ||||| || || || || |||||||| ||||| | || ||| || || Sbjct 274096 TTTAATGCTGGGACGCCTTACCCTCAGATGTCCAGCTGTTTTTTGCTTACAATGAAAGAC 274155 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | || || || | ||| |||| ||||||| | ||||| || || Sbjct 274156 GACAGTATCGAGGGTATATATGACACGCTCAAACAATGTGCACTGATCTCGAAAAACGCG 274215 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||| ||||| | | | || || || ||| || | ||| || || Sbjct 274216 GGTGGGATCGGTCTCAATGTTCACTGCATCCGAAGCAAGAATACGTTTATCGCTGGAACC 274275 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| | || | ||| || | || |||||||| || || ||| ||| || || ||| Sbjct 274276 AATGGGGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGCACCGCTCGTTAT 274335 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || | | || ||| | | | || | | || ||||||| || |||||||| Sbjct 274336 GTCGATC-AGGGAGGCAACAAACGACCCGGTGCCTTTGCCATCTATCTCGAACCATGGCA 274394 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG--GCGCGG 112082 ||||| | || |||| | ||||| || ||| || | ||||||| |||| Sbjct 274395 TCCGGATGTACTGCAGTTTGTGGAGTTACGGAAGAACACTGGCGCTGAGGAGATTCGCGC 274454 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | || ||||||||| ||| || ||| |||| ||||| ||||||||| ||||||||| Sbjct 274455 T--CGGGATCTCTTCCTCGCACTTTGGGTTCCCGATCTATTCATGAAGCGAGTTGAGG 274510 >seq11759 Length=791511 Score = 104 bits (114), Expect = 3e-17 Identities = 173/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || ||| | ||||| ||||| | || ||| || ||||| || |||||||| | | | Sbjct 466317 CTGTTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGG 466258 Query 102150 TGGTTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| ||| ||| |||| | | ||| || ||||| || | || || || ||| Sbjct 466257 TGGATTGCAAATAAAAAGGCAC---CCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTT 466201 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCT 102265 || || | ||||| |||||||| || ||| | |||| |||||||||||||| ||||| Sbjct 466200 GAAGGCGTATTCTTTTCTGGTTCATT-TGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCT 466142 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 |||||| || ||| ||| || ||||| ||| ||| ||||| || |||||| || Sbjct 466141 CATGCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGA 466082 Query 102326 GTTTGC 102331 ||||| Sbjct 466081 TTTTGC 466076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620640512894320