Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 113 5e-20
seq11759 95.1 1e-14
>seq1473
Length=538379
Score = 113 bits (124), Expect = 5e-20
Identities = 380/589 (65%), Gaps = 11/589 (2%)
Strand=Plus/Minus
Query 110606 CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAAC 110665
||||||| | ||||||||| || || |||| ||| | || ||| || || || |
Sbjct 274510 CCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGC 274451
Query 110666 GAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCC 110725
|| ||| ||| | || ||| |||| ||||| ||| | || | ||||| ||||
Sbjct 274450 GAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCC 274391
Query 110726 ATGGTTCGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAG 110781
||||||||||||||| || | || || | | | | || |||| | |||||
Sbjct 274390 ATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTG-CCTCCCTGATCGACATAA 274332
Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841
|| || ||| |||||||||| ||||| || | || || | ||| | ||||| ||
Sbjct 274331 CGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTT 274272
Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901
|| || | || ||| || ||| ||| | || | ||| || ||||||||
Sbjct 274271 CCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCG 274212
Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961
|| || ||||||| | | |||| || |||| ||||| || || || |
Sbjct 274211 TTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCT 274152
Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021
|| | | || | ||| || ||||||||||| |||||| || ||||| || ||
Sbjct 274151 TTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGA 274092
Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAG 111081
|| |||| || ||||| ||| || ||||| || || || || | || | |
Sbjct 274091 GTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCG 274032
Query 111082 GGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTC- 111140
||||||| ||| |||||||| || | || ||||| ||||| || |||||| | ||
Sbjct 274031 TCCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTCC 273972
Query 111141 --GATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCT 111187
|||| || ||||| ||| |||| || ||||||| ||||
Sbjct 273971 CAGATT---TTCCCATCCCTACGGAGAAGATACGATTTCTCTAATGTCT 273926
Score = 86.0 bits (94), Expect = 7e-12
Identities = 163/234 (70%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466
||| ||||||||||| ||||||||||| ||| ||||| ||||| | |||||| |
Sbjct 275927 GCGCAGATAATACATCCCCGTTTTGAGTCCACGTTTCCAGGCGTAGAAATGCATACTCGT 275868
Query 109467 GAGTTTGGAAAGT-GTCGGACT-CTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524
|| ||| | || || || || || ||| ||| ||| | ||||| ||| || |||
Sbjct 275867 GATTTT--ACCGTAGTTGGGCTCCTTCATGTACAGGTTGAGAGACTGGCTCTGGTCAATG 275810
Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584
|| || |||||||||| |||| |||| || || ||| || ||||| || ||
Sbjct 275809 AACGGAGCACGATCAGCTGCCAAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTT 275750
Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCA-CGATGTTTTGAATAGAGCC 109637
||||| | | ||||| || || ||||| |||| | || | ||||| || ||
Sbjct 275749 TTGTAGAGAGCCTTGAGGTCTTCTGGAAT-TCCATCAATATCCTGAATGGATCC 275697
>seq11759
Length=791511
Score = 95.1 bits (104), Expect = 1e-14
Identities = 361/559 (65%), Gaps = 26/559 (5%)
Strand=Plus/Plus
Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557
|||| | || || || ||||| || ||| ||| ||||||||||| ||| || |||||
Sbjct 466079 AAATCCGTG-TGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGG 466137
Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617
|||||| || | ||||| ||||| || |||| | ||| ||||||||||| | |||
Sbjct 466138 CATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATACGCC 466197
Query 119618 CTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGT------CGAA 119671
|| || ||||| || | |||||||| || | ||| | ||| | | |
Sbjct 466198 TTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGT---GCCTTTTTATTTGCAAT 466254
Query 119672 CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTT---- 119727
|||| | || ||||| | |||||| | | || || | ||||| ||||| |
Sbjct 466255 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 466314
Query 119728 CGAAAAGTTGC-TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAG 119786
| ||||| || ||| || |||||| | || |||| || || ||||||
Sbjct 466315 CAGAAAGTCGCGTTCCATT-----GGATCCTTGACGTAGGTATCGATCAGAAGAGAGTAC 466369
Query 119787 GTCTCACCATGAACCATTTCATTGTGTGAC-TGATAGGCATAAAATGAGCGAGCTTCGGA 119845
| ||| ||||| |||| | | ||| || ||||||| | ||||| ||||
Sbjct 466370 ATTTCAGAATGAATGTTTTCGACG-GCGACTTGCATTCCATAAAAACAACGAGCCTCGGG 466428
Query 119846 AATTTGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCC 119905
|||||| || |||| | |||||| | | ||||||| ||| || ||||| |
Sbjct 466429 AATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGC 466488
Query 119906 AGCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCA 119965
|||||||| || |||| ||| ||||| | |||| ||| || || ||| |||
Sbjct 466489 TGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCA 466548
Query 119966 GTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGA--CATCTGTGCC 120023
||| | ||| || | | || || || ||| | |||||| ||| || | ||
Sbjct 466549 GTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAAC--CGCT 466606
Query 120024 TTTTTATAGAGTTCCCAAA 120042
|| || |||| |||||||
Sbjct 466607 TTCTTGTAGAACTCCCAAA 466625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588879326951800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |