Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1473 113 5e-20 seq11759 95.1 1e-14 >seq1473 Length=538379 Score = 113 bits (124), Expect = 5e-20 Identities = 380/589 (65%), Gaps = 11/589 (2%) Strand=Plus/Minus Query 110606 CCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAAC 110665 ||||||| | ||||||||| || || |||| ||| | || ||| || || || | Sbjct 274510 CCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGC 274451 Query 110666 GAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCC 110725 || ||| ||| | || ||| |||| ||||| ||| | || | ||||| |||| Sbjct 274450 GAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCC 274391 Query 110726 ATGGTTCGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAG 110781 ||||||||||||||| || | || || | | | | || |||| | ||||| Sbjct 274390 ATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTG-CCTCCCTGATCGACATAA 274332 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 || || ||| |||||||||| ||||| || | || || | ||| | ||||| || Sbjct 274331 CGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTT 274272 Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || || | || ||| || ||| ||| | || | ||| || |||||||| Sbjct 274271 CCAGCGATAAACGTATTCTTGCTTCGGATGCAGTGAACATTGAGACCGATCCCACCCGCG 274212 Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 || || ||||||| | | |||| || |||| ||||| || || || | Sbjct 274211 TTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCT 274152 Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 || | | || | ||| || ||||||||||| |||||| || ||||| || || Sbjct 274151 TTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGA 274092 Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAG 111081 || |||| || ||||| ||| || ||||| || || || || | || | | Sbjct 274091 GTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCG 274032 Query 111082 GGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTC- 111140 ||||||| ||| |||||||| || | || ||||| ||||| || |||||| | || Sbjct 274031 TCCACATCTTCACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTCC 273972 Query 111141 --GATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCT 111187 |||| || ||||| ||| |||| || ||||||| |||| Sbjct 273971 CAGATT---TTCCCATCCCTACGGAGAAGATACGATTTCTCTAATGTCT 273926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| ||||||||||| ||||||||||| ||| ||||| ||||| | |||||| | Sbjct 275927 GCGCAGATAATACATCCCCGTTTTGAGTCCACGTTTCCAGGCGTAGAAATGCATACTCGT 275868 Query 109467 GAGTTTGGAAAGT-GTCGGACT-CTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 || ||| | || || || || || ||| ||| ||| | ||||| ||| || ||| Sbjct 275867 GATTTT--ACCGTAGTTGGGCTCCTTCATGTACAGGTTGAGAGACTGGCTCTGGTCAATG 275810 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 || || |||||||||| |||| |||| || || ||| || ||||| || || Sbjct 275809 AACGGAGCACGATCAGCTGCCAAATCGAGTATTTTTTTCTGGGGTATCTCCCAAACTGTT 275750 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCA-CGATGTTTTGAATAGAGCC 109637 ||||| | | ||||| || || ||||| |||| | || | ||||| || || Sbjct 275749 TTGTAGAGAGCCTTGAGGTCTTCTGGAAT-TCCATCAATATCCTGAATGGATCC 275697 >seq11759 Length=791511 Score = 95.1 bits (104), Expect = 1e-14 Identities = 361/559 (65%), Gaps = 26/559 (5%) Strand=Plus/Plus Query 119498 AAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGG 119557 |||| | || || || ||||| || ||| ||| ||||||||||| ||| || ||||| Sbjct 466079 AAATCCGTG-TGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGG 466137 Query 119558 CATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCC 119617 |||||| || | ||||| ||||| || |||| | ||| ||||||||||| | ||| Sbjct 466138 CATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAATACGCC 466197 Query 119618 CTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGT------CGAA 119671 || || ||||| || | |||||||| || | ||| | ||| | | | Sbjct 466198 TTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGT---GCCTTTTTATTTGCAAT 466254 Query 119672 CCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTT---- 119727 |||| | || ||||| | |||||| | | || || | ||||| ||||| | Sbjct 466255 CCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAA 466314 Query 119728 CGAAAAGTTGC-TTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAG 119786 | ||||| || ||| || |||||| | || |||| || || |||||| Sbjct 466315 CAGAAAGTCGCGTTCCATT-----GGATCCTTGACGTAGGTATCGATCAGAAGAGAGTAC 466369 Query 119787 GTCTCACCATGAACCATTTCATTGTGTGAC-TGATAGGCATAAAATGAGCGAGCTTCGGA 119845 | ||| ||||| |||| | | ||| || ||||||| | ||||| |||| Sbjct 466370 ATTTCAGAATGAATGTTTTCGACG-GCGACTTGCATTCCATAAAAACAACGAGCCTCGGG 466428 Query 119846 AATTTGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCC 119905 |||||| || |||| | |||||| | | ||||||| ||| || ||||| | Sbjct 466429 AATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGC 466488 Query 119906 AGCGAAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCA 119965 |||||||| || |||| ||| ||||| | |||| ||| || || ||| ||| Sbjct 466489 TGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCCA 466548 Query 119966 GTCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGA--CATCTGTGCC 120023 ||| | ||| || | | || || || ||| | |||||| ||| || | || Sbjct 466549 GTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGAGGCAAC--CGCT 466606 Query 120024 TTTTTATAGAGTTCCCAAA 120042 || || |||| ||||||| Sbjct 466607 TTCTTGTAGAACTCCCAAA 466625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588879326951800