Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5605 89.7 6e-13 seq11759 86.0 7e-12 >seq5605 Length=468275 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || ||||| |||||||||||| | ||||||||||| || |||||| || || Sbjct 239958 TTACCGCGCAGAGGGAAGACGCCATAGCGGTCACGTCCAACCACTCCGAGACCGGCCACG 240017 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 ||||| | || || || || ||||| |||| |||||||| || | || | | Sbjct 240018 GCAAGAGACTTGGCCGAGTCTCCCTCTGTGAGGATGAGGGTGCAGTGCTGCGAGTTCCTT 240077 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530 || || || | ||| || ||||||| ||| ||||| || | | ||||| Sbjct 240078 GTCCCTGCATCGTTGGCATCGTCCAGCTTTGGAATCCCCTTTAATTTGG 240126 >seq11759 Length=791511 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| ||| |||||| || || ||||| || || ||||| ||| ||||| Sbjct 466076 GCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCA 466135 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| |||| | ||| ||||| || || ||||| | Sbjct 466136 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA-AATGAACCAGAAAAGAATAC 466194 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGT---C 117449 || || || || ||||| | || ||||||||| ||| | | |||| | | | Sbjct 466195 GCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGG---GTGCCTTTTTATTTGC 466251 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 || ||| | | ||||| | |||||||| ||| ||| || | ||||| ||||| | Sbjct 466252 AATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTT 466311 Query 117510 AAA 117512 ||| Sbjct 466312 AAA 466314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589883962026440