Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5605 89.7 6e-13
seq11759 86.0 7e-12
>seq5605
Length=468275
Score = 89.7 bits (98), Expect = 6e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421
|| || || ||||| |||||||||||| | ||||||||||| || |||||| || ||
Sbjct 239958 TTACCGCGCAGAGGGAAGACGCCATAGCGGTCACGTCCAACCACTCCGAGACCGGCCACG 240017
Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481
||||| | || || || || ||||| |||| |||||||| || | || | |
Sbjct 240018 GCAAGAGACTTGGCCGAGTCTCCCTCTGTGAGGATGAGGGTGCAGTGCTGCGAGTTCCTT 240077
Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGG 169530
|| || || | ||| || ||||||| ||| ||||| || | | |||||
Sbjct 240078 GTCCCTGCATCGTTGGCATCGTCCAGCTTTGGAATCCCCTTTAATTTGG 240126
>seq11759
Length=791511
Score = 86.0 bits (94), Expect = 7e-12
Identities = 167/243 (69%), Gaps = 8/243 (3%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| ||| |||||| || || ||||| || || ||||| ||| |||||
Sbjct 466076 GCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCA 466135
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392
||||||||||| |||||||| | ||| |||| | ||| ||||| || || ||||| |
Sbjct 466136 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA-AATGAACCAGAAAAGAATAC 466194
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGT---C 117449
|| || || || ||||| | || ||||||||| ||| | | |||| | | |
Sbjct 466195 GCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGG---GTGCCTTTTTATTTGC 466251
Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509
|| ||| | | ||||| | |||||||| ||| ||| || | ||||| ||||| |
Sbjct 466252 AATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTT 466311
Query 117510 AAA 117512
|||
Sbjct 466312 AAA 466314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589883962026440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |