Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq7336 158 3e-33
seq1039 147 5e-30
seq7000 125 2e-23
seq7187 122 2e-22
>seq7336
Length=62802
Score = 158 bits (174), Expect = 3e-33
Identities = 169/222 (76%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||| | |||||| || || || ||||| ||||||||||| || |||| || || | |
Sbjct 18556 AGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGC 18615
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || || | ||||||||| ||||||||||| |||||||| ||||| || || || |||
Sbjct 18616 CCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 18675
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099
|||||||| |||||| || |||||||| |||| || |||| || || ||||||
Sbjct 18676 TTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGG 18732
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| | || ||||| || | ||| || || || | |||||||
Sbjct 18733 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774
>seq1039
Length=57342
Score = 147 bits (162), Expect = 5e-30
Identities = 157/206 (76%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| ||||| ||||| |||||||| ||||| |||| || || | |||||||| | ||||
Sbjct 49575 TGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGC 49516
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| | ||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 49515 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 49456
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114
||| || ||||| || | ||| ||| ||||| || || |||| ||||| ||
Sbjct 49455 GCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCA 49399
Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140
|||| || || ||||| | ||||||
Sbjct 49398 GTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 140 bits (154), Expect = 7e-28
Identities = 158/208 (76%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
|||||| || ||||| || ||||| ||||| |||| |||| || | ||||| || ||||
Sbjct 42211 GTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGACCATCCTCTAGCT 42269
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|||| ||||||||||| | |||||| |||||||| |||||||| || |||||||| || |
Sbjct 42270 GCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCT 42329
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112
| ||| || ||||| || | ||| ||| ||||| || || |||| ||||| |
Sbjct 42330 TCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCC 42386
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140
| |||| || || ||||| | ||||||
Sbjct 42387 CAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 136 bits (150), Expect = 9e-27
Identities = 158/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || || || || || || |||||||| | |||||| | ||||||||
Sbjct 41522 ACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCC 41581
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || ||||| | ||||||||||||||| |||||||| || |||||||||
Sbjct 41582 AACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 41641
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||| || | ||| ||| ||||| || || |||| |||
Sbjct 41642 ATCTTCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTC 41698
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | || || || || | |||||
Sbjct 41699 TTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || || ||||| |||||||| ||||| || | || || | ||||||||
Sbjct 42890 ACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCC 42949
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || |||||||| ||||| ||||| || |||||||| || |||||||||
Sbjct 42950 AACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 43009
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || |||||||| ||||| |||||| || || || | || ||
Sbjct 43010 ATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTG 43069
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || || || | ||||||
Sbjct 43070 CCGGTTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 125 bits (138), Expect = 2e-23
Identities = 155/208 (75%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
|||||| || ||||| || ||||| ||||| |||| |||| || | ||||| || ||||
Sbjct 41755 GTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGACCATCCTCTAGCT 41813
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|||| ||||||||||| | |||||| |||||||| |||||||| || |||||||| || |
Sbjct 41814 GCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCT 41873
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112
| ||| || ||||| || | ||| ||| ||||| || || |||| ||||| |
Sbjct 41874 TCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCC 41930
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || | || || || || | |||||
Sbjct 41931 CAGTTAGCGTCTTCACAAATATCTGCAT 41958
Score = 125 bits (138), Expect = 2e-23
Identities = 155/208 (75%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
|||||| || ||||| || ||||| ||||| |||| |||| || | ||||| || ||||
Sbjct 41983 GTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGACCATCCTCTAGCT 42041
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|||| ||||||||||| | |||||| |||||||| |||||||| || |||||||| || |
Sbjct 42042 GCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCT 42101
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112
| ||| || ||||| || | ||| ||| ||||| || || |||| ||||| |
Sbjct 42102 TCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCC 42158
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || | || || || || | |||||
Sbjct 42159 CAGTTAGCGTCTTCACAAATATCTGCAT 42186
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||||| || ||||| || ||||| || | | || | ||||||||
Sbjct 32002 ACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCC 32061
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || ||||| || ||||| |||||||| |||||||| || |||||||||
Sbjct 32062 AACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 32121
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||| || | || ||| |||||||| || || | ||
Sbjct 32122 ATCTTCGCCTTCACATTCTCTATCGAATC---ACTGGGCTCCACTTCCAGTGTGATTGTT 32178
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || || ||||| | |||||
Sbjct 32179 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| |||||||| ||||| |||| |||||| | ||||||||
Sbjct 49353 ACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 49294
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||| || || || ||||| | || || || || || || || || || |||||||||
Sbjct 49293 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGA 49234
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||||||||| | || | || || || ||||| | |||||
Sbjct 49233 ATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 49174
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | ||||||
Sbjct 49173 CCGGTAAGCGTCTTCACGAAGATTTGCAT 49145
Score = 114 bits (126), Expect = 3e-20
Identities = 154/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||||| || ||||| || ||||| || | | || | ||||||||
Sbjct 31546 ACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCC 31605
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || ||||| || ||||| |||||||| ||||||||||| || ||||||
Sbjct 31606 AACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGA 31665
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||| || | || ||| ||||| || || || | ||
Sbjct 31666 ATCTTCGCCTTCACATTCTCTATCGAATC---ACTGGGCTCCACCTCCAGTGTGATTGTT 31722
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || || | ||| || ||||| | ||||||
Sbjct 31723 TTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755
>seq7000
Length=1252665
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || |||||||||||||| | | | | ||||| ||
Sbjct 319595 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCC 319654
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||||| || || || ||||| || ||||||||||| ||||| || || ||||| |||
Sbjct 319655 AATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGA 319714
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || |||||||| | || ||| ||| || ||||| || | || ||
Sbjct 319715 ATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTG 319774
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | |||||| || || | |||||
Sbjct 319775 CCGGTAAGAGTTTTCACAAAAATCTGCAT 319803
>seq7187
Length=4100
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| ||||| || ||||| || ||||| || | | || | ||||||||
Sbjct 634 ACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCC 693
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || ||||| || ||||| |||||||| |||||||| || |||||||||
Sbjct 694 AACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 753
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||| || | || ||| |||||||| || || | ||
Sbjct 754 ATCTTCGCCTTCACATTCTCTATCGAATC---ACTGGGCTCCACTTCCAGTGTGATTGTT 810
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| || || ||||| | |||||
Sbjct 811 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109294939775477
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