Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7336 158 3e-33 seq1039 147 5e-30 seq7000 125 2e-23 seq7187 122 2e-22 >seq7336 Length=62802 Score = 158 bits (174), Expect = 3e-33 Identities = 169/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | |||||| || || || ||||| ||||||||||| || |||| || || | | Sbjct 18556 AGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGC 18615 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | ||||||||| ||||||||||| |||||||| ||||| || || || ||| Sbjct 18616 CCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCT 18675 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 |||||||| |||||| || |||||||| |||| || |||| || || |||||| Sbjct 18676 TTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGG 18732 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || ||||| || | ||| || || || | ||||||| Sbjct 18733 GTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774 >seq1039 Length=57342 Score = 147 bits (162), Expect = 5e-30 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| |||||||| ||||| |||| || || | |||||||| | |||| Sbjct 49575 TGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGC 49516 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | ||||||||||||||| |||||||| || ||||||||||| ||| Sbjct 49515 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 49456 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || ||||| || | ||| ||| ||||| || || |||| ||||| || Sbjct 49455 GCCTTCACATTCTCTATCGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCA 49399 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| | |||||| Sbjct 49398 GTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 140 bits (154), Expect = 7e-28 Identities = 158/208 (76%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| || ||||| || ||||| ||||| |||| |||| || | ||||| || |||| Sbjct 42211 GTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGACCATCCTCTAGCT 42269 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| ||||||||||| | |||||| |||||||| |||||||| || |||||||| || | Sbjct 42270 GCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCT 42329 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| || ||||| || | ||| ||| ||||| || || |||| ||||| | Sbjct 42330 TCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCC 42386 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| || || ||||| | |||||| Sbjct 42387 CAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || || || || |||||||| | |||||| | |||||||| Sbjct 41522 ACAAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCC 41581 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| | ||||||||||||||| |||||||| || ||||||||| Sbjct 41582 AACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 41641 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| || | ||| ||| ||||| || || |||| ||| Sbjct 41642 ATCTTCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTC 41698 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 41699 TTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41730 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| |||||||| ||||| || | || || | |||||||| Sbjct 42890 ACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCC 42949 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || |||||||| ||||| ||||| || |||||||| || ||||||||| Sbjct 42950 AACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGA 43009 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| ||||| |||||| || || || | || || Sbjct 43010 ATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTG 43069 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | |||||| Sbjct 43070 CCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 125 bits (138), Expect = 2e-23 Identities = 155/208 (75%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| || ||||| || ||||| ||||| |||| |||| || | ||||| || |||| Sbjct 41755 GTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGACCATCCTCTAGCT 41813 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| ||||||||||| | |||||| |||||||| |||||||| || |||||||| || | Sbjct 41814 GCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCT 41873 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| || ||||| || | ||| ||| ||||| || || |||| ||||| | Sbjct 41874 TCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCC 41930 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | || || || || | ||||| Sbjct 41931 CAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 125 bits (138), Expect = 2e-23 Identities = 155/208 (75%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| || ||||| || ||||| ||||| |||| |||| || | ||||| || |||| Sbjct 41983 GTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAG-GTGCGACCATCCTCTAGCT 42041 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| ||||||||||| | |||||| |||||||| |||||||| || |||||||| || | Sbjct 42042 GCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGGATCT 42101 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| || ||||| || | ||| ||| ||||| || || |||| ||||| | Sbjct 42102 TCGCCTTCACATTCTCTATTGAGTC---ACTCGGCTCCACCTCCAGCGTAATAGTCTTCC 42158 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | || || || || | ||||| Sbjct 42159 CAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||| || ||||| || ||||| || | | || | |||||||| Sbjct 32002 ACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCC 32061 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| |||||||| |||||||| || ||||||||| Sbjct 32062 AACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 32121 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| || | || ||| |||||||| || || | || Sbjct 32122 ATCTTCGCCTTCACATTCTCTATCGAATC---ACTGGGCTCCACTTCCAGTGTGATTGTT 32178 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 32179 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| |||| |||||| | |||||||| Sbjct 49353 ACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 49294 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || || ||||| | || || || || || || || || || ||||||||| Sbjct 49293 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGA 49234 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| | || | || || || ||||| | ||||| Sbjct 49233 ATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTC 49174 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 49173 CCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 Score = 114 bits (126), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||| || ||||| || ||||| || | | || | |||||||| Sbjct 31546 ACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCC 31605 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| |||||||| ||||||||||| || |||||| Sbjct 31606 AACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGA 31665 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| || | || ||| ||||| || || || | || Sbjct 31666 ATCTTCGCCTTCACATTCTCTATCGAATC---ACTGGGCTCCACCTCCAGTGTGATTGTT 31722 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | ||| || ||||| | |||||| Sbjct 31723 TTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755 >seq7000 Length=1252665 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || |||||||||||||| | | | | ||||| || Sbjct 319595 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCC 319654 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || ||||| || ||||||||||| ||||| || || ||||| ||| Sbjct 319655 AATTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGA 319714 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || ||| ||| || ||||| || | || || Sbjct 319715 ATCTTAGCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTG 319774 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| || || | ||||| Sbjct 319775 CCGGTAAGAGTTTTCACAAAAATCTGCAT 319803 >seq7187 Length=4100 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| ||||| || ||||| || ||||| || | | || | |||||||| Sbjct 634 ACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCC 693 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| |||||||| |||||||| || ||||||||| Sbjct 694 AACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGA 753 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| || | || ||| |||||||| || || | || Sbjct 754 ATCTTCGCCTTCACATTCTCTATCGAATC---ACTGGGCTCCACTTCCAGTGTGATTGTT 810 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || ||||| | ||||| Sbjct 811 TTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109294939775477