Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 262 4e-65
seq1473 163 3e-35
>seq11759
Length=791511
Score = 262 bits (290), Expect = 4e-65
Identities = 497/726 (68%), Gaps = 18/726 (2%)
Strand=Plus/Plus
Query 18831 ACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890
||||||||| || || | | |||||| || || |||||||||||||| ||| ||| |
Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002
Query 18891 TACTGCCTC-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA 18945
|| ||||| |||| | ||| ||| || || | |||| || | || |
Sbjct 466003 GACCGCCTCCCTCATGATGTCATA-----AACCCTTTCCGCCGTAGGCTTGTTGATAATA 466057
Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005
|||||||| || | ||||||||||| || || || ||||||| ||| |||| |||
Sbjct 466058 TGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCA 466117
Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065
||| ||| || | |||||||| || || | || || | |||||| || |||||||||
Sbjct 466118 TTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAT 466177
Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125
|| ||||||||||||| ||||| || || || || || || || | || | ||
Sbjct 466178 GAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGT 466237
Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185
|| | ||||| |||||| | || |||||||| |||||||| ||||| ||||
Sbjct 466238 GCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAAC 466297
Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245
|| | || | ||||| ||| | || || || ||| || || || | ||| |||
Sbjct 466298 GTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATC 466357
Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305
| | | ||||||||| |||||||| ||||| | || | || | ||| ||||||||
Sbjct 466358 AGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAA 466417
Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTA 19363
| || || | || || || || ||||||| ||| | | |||||||||||| |
Sbjct 466418 CGAGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGA 466475
Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAG 19422
| |||||||| ||||| || || || || |||| ||| || || ||| | | |
Sbjct 466476 TGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCA- 466534
Query 19423 GTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481
|||| | | | ||| ||| | | ||| || | || ||| ||||| ||||| ||||| ||
Sbjct 466535 -TTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAA 466593
Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541
||| || | ||||| || || | | ||| |||||| | ||||| || || | | |||
Sbjct 466594 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 466653
Query 19542 AAATCT 19547
|||||
Sbjct 466654 GAATCT 466659
>seq1473
Length=538379
Score = 163 bits (180), Expect = 3e-35
Identities = 387/580 (67%), Gaps = 6/580 (1%)
Strand=Plus/Minus
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270
|||| |||| ||| || | |||||| || | || | ||||| || | | || |||
Sbjct 274498 TCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAG 274439
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
|||| | ||| | | || | ||| | || || ||| | |||||||||||| | ||
Sbjct 274438 CGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 274379
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
| || || | |||| |||||||| || ||||| ||||| | ||| | || || |||
Sbjct 274378 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 274319
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450
| | || | | ||| || |||| ||| || || ||||||||||| | ||| |||
Sbjct 274318 TGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCGATA-AAC 274260
Query 48451 TTCCACTAGC-TCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507
| || || || || | | |||| | ||| || ||||| || |||| || |
Sbjct 274259 GTATTCTTGCTTCGGATGCAGTGAACATTG--AGACCGATCCCACCCGCGTTTTTCGAGA 274202
Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567
| || ||||| |||| || || ||||| || || || ||||| || ||| |||| | |
Sbjct 274201 TCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTCATTGTAA 274142
Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627
| |||||| || ||||| || || | | || || | |||||| | || || || |
Sbjct 274141 GCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGG 274082
Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687
| ||||| ||||| || || || | | ||||| || |||||| ||| || | |||
Sbjct 274081 CGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCCACATCTT 274022
Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747
||| |||||||| || || ||||| ||||| || ||||| || || |||||
Sbjct 274021 CACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAGATTTTCC 273962
Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787
|| | | |||||| ||||| || ||||| | |||
Sbjct 273961 CATCCCTACGGAGAAGATACGATTTCTCTAATGTCTAAAA 273922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562016536866840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |