Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11759 262 4e-65 seq1473 163 3e-35 >seq11759 Length=791511 Score = 262 bits (290), Expect = 4e-65 Identities = 497/726 (68%), Gaps = 18/726 (2%) Strand=Plus/Plus Query 18831 ACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890 ||||||||| || || | | |||||| || || |||||||||||||| ||| ||| | Sbjct 465943 ACAATTCATGCCAATAAGATCAACAGGCAGGGCGTCTGTAAGAAATTCGCATTCAATACT 466002 Query 18891 TACTGCCTC-----TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA 18945 || ||||| |||| | ||| ||| || || | |||| || | || | Sbjct 466003 GACCGCCTCCCTCATGATGTCATA-----AACCCTTTCCGCCGTAGGCTTGTTGATAATA 466057 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 |||||||| || | ||||||||||| || || || ||||||| ||| |||| ||| Sbjct 466058 TGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCA 466117 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 ||| ||| || | |||||||| || || | || || | |||||| || ||||||||| Sbjct 466118 TTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAT 466177 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || ||||||||||||| ||||| || || || || || || || | || | || Sbjct 466178 GAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGT 466237 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 || | ||||| |||||| | || |||||||| |||||||| ||||| |||| Sbjct 466238 GCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAAC 466297 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 || | || | ||||| ||| | || || || ||| || || || | ||| ||| Sbjct 466298 GTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATC 466357 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | | | ||||||||| |||||||| ||||| | || | || | ||| |||||||| Sbjct 466358 AGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAA 466417 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTA 19363 | || || | || || || || ||||||| ||| | | |||||||||||| | Sbjct 466418 CGAGCCTCGGGAATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGA 466475 Query 19364 TTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAG 19422 | |||||||| ||||| || || || || |||| ||| || || ||| | | | Sbjct 466476 TGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCA- 466534 Query 19423 GTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 |||| | | | ||| ||| | | ||| || | || ||| ||||| ||||| ||||| || Sbjct 466535 -TTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAA 466593 Query 19482 AGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAAC 19541 ||| || | ||||| || || | | ||| |||||| | ||||| || || | | ||| Sbjct 466594 AGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCACAAC 466653 Query 19542 AAATCT 19547 ||||| Sbjct 466654 GAATCT 466659 >seq1473 Length=538379 Score = 163 bits (180), Expect = 3e-35 Identities = 387/580 (67%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| |||| ||| || | |||||| || | || | ||||| || | | || ||| Sbjct 274498 TCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAG 274439 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 |||| | ||| | | || | ||| | || || ||| | |||||||||||| | || Sbjct 274438 CGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCGAGAT 274379 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | |||| |||||||| || ||||| ||||| | ||| | || || ||| Sbjct 274378 AGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTGCTGT 274319 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | ||| || |||| ||| || || ||||||||||| | ||| ||| Sbjct 274318 TGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCGATA-AAC 274260 Query 48451 TTCCACTAGC-TCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 | || || || || | | |||| | ||| || ||||| || |||| || | Sbjct 274259 GTATTCTTGCTTCGGATGCAGTGAACATTG--AGACCGATCCCACCCGCGTTTTTCGAGA 274202 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | || ||||| |||| || || ||||| || || || ||||| || ||| |||| | | Sbjct 274201 TCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGTCTTTCATTGTAA 274142 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 | |||||| || ||||| || || | | || || | |||||| | || || || | Sbjct 274141 GCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAAGAGTGGGTGAGG 274082 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 | ||||| ||||| || || || | | ||||| || |||||| ||| || | ||| Sbjct 274081 CGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTCAATAGCAGCGTCCACATCTT 274022 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747 ||| |||||||| || || ||||| ||||| || ||||| || || ||||| Sbjct 274021 CACCATGAATACCTATCGAGACGCGCATAAACATGTACTGAGGCCTCTCCCAGATTTTCC 273962 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787 || | | |||||| ||||| || ||||| | ||| Sbjct 273961 CATCCCTACGGAGAAGATACGATTTCTCTAATGTCTAAAA 273922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562016536866840