Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq11759 185 1e-41 >seq11759 Length=791511 Score = 185 bits (204), Expect = 1e-41 Identities = 371/544 (68%), Gaps = 12/544 (2%) Strand=Plus/Plus Query 37160 ATATTTAAACAATAAA-CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATT 37218 || |||||| ||||| ||||||||||| || | ||||| |||| ||| |||| | Sbjct 466057 ATGTTTAAA-AATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCT 466115 Query 37219 CATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAA 37278 ||||| |||||| | || ||||| | ||| | || || | ||| || || | |||| Sbjct 466116 CATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAA 466175 Query 37279 AAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAG 37338 | || ||||||||||| | |||||||| || || || || || ||||| || | | Sbjct 466176 ATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGG 466235 Query 37339 TTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAA 37398 || | | || | |||||| | | |||||| ||||| |||||| | Sbjct 466236 GTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCA 466295 Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATC 37456 |||| ||| || || || ||||||| ||| || | ||| | | || ||||| Sbjct 466296 ACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTC--CATTGGATCCTTGACGTAGGTATC 466353 Query 37457 AATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 || || | | ||||||||||| ||||| ||||| | || | || | |||||||| Sbjct 466354 GATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAA 466413 Query 37517 ACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAAC 37576 ||| | ||| || | | |||||| |||||| |||| || || || ||||||||||| Sbjct 466414 ACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATTAAC 466473 Query 37577 TATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTT---CATC 37633 || |||||||| ||||| |||||||| | ||||| || || || | || |||| Sbjct 466474 GATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATC 466533 Query 37634 ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCA 37693 ||| | ||| ||| ||| | | ||| || | || ||||||||| ||||| ||||| Sbjct 466534 ATT---AAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCA 466590 Query 37694 AAAA 37697 ||| Sbjct 466591 GAAA 466594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592219578601240