Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq7000 138 9e-28
seq1039 125 6e-24
>seq7000
Length=1252665
Score = 138 bits (152), Expect = 9e-28
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|||||||| || || || || ||||||||||| | | | | |||| |||||||||
Sbjct 319601 TGAAGGGTTGACTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGC 319660
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | ||||||||| || |||||||| || || || || ||||| ||
Sbjct 319661 TTGCCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTA 319720
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | || || || | ||| || |||||||||| |||||||||||
Sbjct 319721 GCCTTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTA 319780
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| |||||| ||||| |||||||||
Sbjct 319781 AGAGTTTTCACAAAAATCTGCATG 319804
>seq1039
Length=57342
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| | || | ||||||||| ||||| ||||| || ||||| || |
Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 31587
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| ||||| ||||| || ||||| |||| || || || || || |||
Sbjct 31588 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 31647
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| ||||||||||| || || ||| | |||| | ||| | |||||
Sbjct 31648 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACC 31707
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| ||||||||||||| ||| || || || ||||||||
Sbjct 31708 TCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754
Score = 125 bits (138), Expect = 6e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|||||||| ||||| || || || |||||||| | | ||| | |||| ||||| |||
Sbjct 41528 TGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGC 41587
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| ||||| || ||||| || || |||||||| || || |||||||| ||
Sbjct 41588 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTC 41647
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | |||| | |||| || ||||| || || || | || || || |||
Sbjct 41648 GCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTT 41707
Query 101447 AAAGTTTTTACAAATATCTGCATG 101470
| || || |||||||||||||||
Sbjct 41708 AGCGTCTTCACAAATATCTGCATG 41731
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| || || || ||||| || || || || | | ||| | | || ||||| |||
Sbjct 42668 TGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGC 42727
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| || || ||||||||||||||||| || |||||||| || ||||| || || ||
Sbjct 42728 TTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTC 42787
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|||||| | || | | ||| | ||| ||||| || || | || |||||||||
Sbjct 42788 GCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTT 42847
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||| || ||||| || |||||
Sbjct 42848 AGAGTCTTGACAAAGATTTGCAT 42870
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| ||||| || || ||||| || ||||| || | | || | |||| ||||| ||
Sbjct 42895 ATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTG 42954
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| || | || || || || || |||||||| || || |||||||| ||
Sbjct 42955 CTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTT 43014
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | ||||| | |||||| || || |||| |||||||||||
Sbjct 43015 CGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGT 43074
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478
|| ||| || ||||| || ||||| || |||||
Sbjct 43075 TAGAGTCTTCACAAAAATTTGCATCGTAACGCG 43107
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
||||| | || || ||||| || || || || || || |||||||| | | || |
Sbjct 42425 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGA 42484
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
|||| |||| ||||| ||||| || ||||| || || || || || |||||||| ||
Sbjct 42485 CCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42544
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|||||||| || || || || | |||| | |||| | ||||| || | |||
Sbjct 42545 TTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTG 42604
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| || | ||||| ||||||||||||||
Sbjct 42605 ATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
||||| | || || ||||| || || || || || || ||||| |||| | || |
Sbjct 41741 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 41800
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
|||| || | ||||| ||||| || ||||| || || || || || |||||||| ||
Sbjct 41801 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 41860
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|| ||||| || || || ||| | |||| | |||| || ||||| || || ||
Sbjct 41861 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 41920
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
| || || || |||| || || |||||||||||||||
Sbjct 41921 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 41959
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
||||| | || || ||||| || || || || || || ||||| |||| | || |
Sbjct 41969 AAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 42028
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
|||| || | ||||| ||||| || ||||| || || || || || |||||||| ||
Sbjct 42029 CCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCC 42088
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|| ||||| || || || ||| | |||| | |||| || ||||| || || ||
Sbjct 42089 TTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTA 42148
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
| || || || |||| || || |||||||||||||||
Sbjct 42149 ATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCATG 42187
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| || || || ||||| || ||||| |||| | ||| | |||| ||||| ||
Sbjct 49347 TGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGT 49288
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| || ||||| ||||||||||| ||||| || || || || || || |||||||| ||
Sbjct 49287 TTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATCTT 49229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396214981957767
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |