Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 131 1e-25
seq7000 107 1e-18
seq7187 98.7 8e-16
seq7336 89.7 4e-13
>seq1039
Length=57342
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | ||| || | ||||||||| || || ||| |||||||| ||||| || ||
Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || ||||||||||| || ||||| |||| ||| ||||| || | |||
Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||||| || ||| | | || || || |||||||
Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| |||||| || || || |||| || || || || || |||||
Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || ||||||||||| ||| | ||| | || ||||||||||| || |||||
Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| ||| ||||| || | |||| |||||||||||| |||||| || |||
Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTC 41659
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | || || || ||||||||||| |||||| || || || || | || || |||
Sbjct 41660 TCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACA 41719
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 41720 AATATCTGCAT 41730
Score = 111 bits (122), Expect = 1e-19
Identities = 161/225 (72%), Gaps = 8/225 (4%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || || ||| |||||||| ||||| ||||| || | |||
Sbjct 42881 AGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGA 42940
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| || ||||| || || || || || |||| |||| |||||||
Sbjct 42941 CCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCC 43000
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724
||||| |||||| || ||| | || | | || ||| ||||||||||
Sbjct 43001 TTGTCTTGAATCTTCGCCTTCACA-TTCTCA---ATTGTGTCGCTGGGTTCCACCTCCAG 43056
Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
||| || ||||| || || | ||| || |||||||| ||||||||
Sbjct 43057 CGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCATCGT 43101
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| ||||| ||| |||||||| || || ||||| ||| | ||| |||| |||||||||
Sbjct 42668 TGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGC 42727
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
||||| || || |||| ||||||||||| | |||| ||||||||| || |||||
Sbjct 42728 TTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTC 42787
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|||||| | | || || | || || |||| ||| || || || || ||
Sbjct 42788 GCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTT 42847
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| ||| || ||||| || |||||
Sbjct 42848 AGAGTCTTGACAAAGATTTGCAT 42870
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || ||| || ||||| || ||||| ||||| | | |||
Sbjct 31993 AGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGA 32052
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| || ||||| ||||| || || || || | |||| |||||||
Sbjct 32053 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCC 32112
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | || || | |||||| |||| ||
Sbjct 32113 TTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTG 32172
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| ||||| || ||||| || || || || |||||||||
Sbjct 32173 ATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATC 32211
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| |
Sbjct 41744 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 41803
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | |||||| || || || |||| ||| || || || | |||| ||||||||||
Sbjct 41804 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 41863
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||| || ||| | | || || || ||||||||||| ||||||
Sbjct 41864 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 41923
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || | || || ||||| ||||||||
Sbjct 41924 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| |
Sbjct 41972 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 42031
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | |||||| || || || |||| ||| || || || | |||| ||||||||||
Sbjct 42032 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 42091
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||| || ||| | | || || || ||||||||||| ||||||
Sbjct 42092 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 42151
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || | || || ||||| ||||||||
Sbjct 42152 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| |
Sbjct 42200 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 42259
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| || | |||||| || || || |||| ||| || || || | |||| ||||||||||
Sbjct 42260 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 42319
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||| || ||| | | || || || ||||||||||| ||||||
Sbjct 42320 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 42379
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || |||| || || || || || |||||
Sbjct 42380 GTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || ||| || ||||| || ||||| ||||| | | |||
Sbjct 31537 AGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGA 31596
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| || ||||| ||||| || || || || | |||| ||| |||
Sbjct 31597 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCC 31656
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || |||||| || ||| | | || || | ||||||||||| ||
Sbjct 31657 TTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTG 31716
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || | ||| || || || ||||||||
Sbjct 31717 ATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || || || ||| |||||||| ||||| || || ||| | |||
Sbjct 49362 AGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGA 49303
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||||||| || || ||||| |||| ||||| ||||||| || | ||||||
Sbjct 49302 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCC 49243
Query 48669 TTGTCGCTAATCTT 48682
||||| ||||||
Sbjct 49242 TTGTCTTGAATCTT 49229
>seq7000
Length=1252665
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||||||||||||||||| || | || ||||| ||||| || |||||
Sbjct 319612 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 319671
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || |||||||| || | |||| ||||||||||| |||||| || |||
Sbjct 319672 AATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATT 319731
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | ||| || || | || ||||| | || || ||||| || || | |||||| ||
Sbjct 319732 CTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 319791
Query 48755 AAAAATCTGCAT 48766
||||||||||||
Sbjct 319792 AAAAATCTGCAT 319803
>seq7187
Length=4100
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || ||| || ||||| || ||||| ||||| | | |||
Sbjct 625 AGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGA 684
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| || ||||| ||||| || || || || | |||| |||||||
Sbjct 685 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCC 744
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | || || | |||||| |||| ||
Sbjct 745 TTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTG 804
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| ||||| || ||||| || || || || |||||||||
Sbjct 805 ATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATC 843
>seq7336
Length=62802
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| ||||||||||| || || || || | || |||| || |||||||||||||| ||
Sbjct 18582 CTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAA 18641
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || || |||||||| | || | ||||| ||||| || ||| ||||||
Sbjct 18642 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 18701
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || | ||| ||||| | || || |||||||| || | ||| || ||
Sbjct 18702 CTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 18761
Query 48755 AAAAATCTGCAT 48766
|||||| |||||
Sbjct 18762 AAAAATTTGCAT 18773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380876637008313
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