Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1039 131 1e-25 seq7000 107 1e-18 seq7187 98.7 8e-16 seq7336 89.7 4e-13 >seq1039 Length=57342 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||| || | ||||||||| || || ||| |||||||| ||||| || || Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || ||||||||||| || ||||| |||| ||| ||||| || | ||| Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||||| || ||| | | || || || ||||||| Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| || || || |||| || || || || || ||||| Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||||||||| ||| | ||| | || ||||||||||| || ||||| Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||| ||||| || | |||| |||||||||||| |||||| || ||| Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTC 41659 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| |||||| || || || || | || || ||| Sbjct 41660 TCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACA 41719 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 41720 AATATCTGCAT 41730 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| |||||||| ||||| ||||| || | ||| Sbjct 42881 AGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGA 42940 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || || || || || |||| |||| ||||||| Sbjct 42941 CCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCC 43000 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CTCCACCTCCAC 48724 ||||| |||||| || ||| | || | | || ||| |||||||||| Sbjct 43001 TTGTCTTGAATCTTCGCCTTCACA-TTCTCA---ATTGTGTCGCTGGGTTCCACCTCCAG 43056 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||| || ||||| || || | ||| || |||||||| |||||||| Sbjct 43057 CGTGATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCATCGT 43101 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| |||||||| || || ||||| ||| | ||| |||| ||||||||| Sbjct 42668 TGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGC 42727 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| || || |||| ||||||||||| | |||| ||||||||| || ||||| Sbjct 42728 TTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTC 42787 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 |||||| | | || || | || || |||| ||| || || || || || Sbjct 42788 GCCTTTACATTCTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTT 42847 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | ||| || ||||| || ||||| Sbjct 42848 AGAGTCTTGACAAAGATTTGCAT 42870 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| || ||||| || ||||| ||||| | | ||| Sbjct 31993 AGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGA 32052 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| || || || || | |||| ||||||| Sbjct 32053 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCC 32112 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || | |||||| |||| || Sbjct 32113 TTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTG 32172 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || ||||| || || || || ||||||||| Sbjct 32173 ATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATC 32211 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| | Sbjct 41744 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 41803 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || || || |||| ||| || || || | |||| |||||||||| Sbjct 41804 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 41863 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | || || || ||||||||||| |||||| Sbjct 41864 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 41923 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || | || || ||||| |||||||| Sbjct 41924 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| | Sbjct 41972 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 42031 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || || || |||| ||| || || || | |||| |||||||||| Sbjct 42032 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 42091 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | || || || ||||||||||| |||||| Sbjct 42092 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 42151 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || | || || ||||| |||||||| Sbjct 42152 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| || ||||| ||| || ||||| ||||| || || | | ||| | Sbjct 42200 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 42259 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || || || |||| ||| || || || | |||| |||||||||| Sbjct 42260 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 42319 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | || || || ||||||||||| |||||| Sbjct 42320 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 42379 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||| || || || || || ||||| Sbjct 42380 GTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| || ||||| || ||||| ||||| | | ||| Sbjct 31537 AGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGA 31596 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| || || || || | |||| ||| ||| Sbjct 31597 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCC 31656 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | || || | ||||||||||| || Sbjct 31657 TTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTG 31716 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||| || || || |||||||| Sbjct 31717 ATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| |||||||| ||||| || || ||| | ||| Sbjct 49362 AGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGA 49303 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| |||| ||||| ||||||| || | |||||| Sbjct 49302 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCC 49243 Query 48669 TTGTCGCTAATCTT 48682 ||||| |||||| Sbjct 49242 TTGTCTTGAATCTT 49229 >seq7000 Length=1252665 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||||||||||||||||| || | || ||||| ||||| || ||||| Sbjct 319612 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 319671 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || |||||||| || | |||| ||||||||||| |||||| || ||| Sbjct 319672 AATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATT 319731 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | ||| || || | || ||||| | || || ||||| || || | |||||| || Sbjct 319732 CTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 319791 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 319792 AAAAATCTGCAT 319803 >seq7187 Length=4100 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| || ||||| || ||||| ||||| | | ||| Sbjct 625 AGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGA 684 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| || || || || | |||| ||||||| Sbjct 685 CCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCC 744 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || | |||||| |||| || Sbjct 745 TTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTG 804 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || ||||| || || || || ||||||||| Sbjct 805 ATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATC 843 >seq7336 Length=62802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||||||| || || || || | || |||| || |||||||||||||| || Sbjct 18582 CTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAA 18641 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || |||||||| | || | ||||| ||||| || ||| |||||| Sbjct 18642 GATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTT 18701 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | || || |||||||| || | ||| || || Sbjct 18702 CTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAAC 18761 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 18762 AAAAATTTGCAT 18773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380876637008313