Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11759 113 8e-20 seq1473 89.7 1e-12 >seq11759 Length=791511 Score = 113 bits (124), Expect = 8e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||| ||| |||| | ||||||||| || ||||| ||| | || ||| ||| Sbjct 466072 GCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAG 466131 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||||| || | || |||||||||||||| | || || || ||||| ||||| Sbjct 466132 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAA 466191 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 | ||| || || || |||||||| || | ||| || | | || || || | || Sbjct 466192 TACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGC 466251 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 ||||| ||||||||| || |||||||| Sbjct 466252 AATCCACCTAAGCGCCCAATCGGCCTTCTT 466281 >seq1473 Length=538379 Score = 89.7 bits (98), Expect = 1e-12 Identities = 305/472 (65%), Gaps = 19/472 (4%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || || ||||| || ||| ||| || |||| | | || Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || | |||| ||| || || | || | ||| | | | |||| ||||| || Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCC 213989 || | |||||||||||||| || || | | ||||| ||||| || || | || Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 ||||||||| || || | ||||| || |||||||||| || |||||||| || Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266 Query 214050 ATATACG------AGC--CGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGG 214101 ||| ||| || |||| | ||| || ||| |||| || || ||||| | Sbjct 274265 ATAAACGTATTCTTGCTTCGGATG----CAG--TGAACATTGAGA--CCGATCCCACCCG 274214 Query 214102 CGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCAT 214161 ||| || ||||||| || || | | | || || || || | || ||||| | Sbjct 274213 CGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGT 274154 Query 214162 CTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAA 214221 || | | | ||||| || ||||| || | ||| || | || |||| || |||| Sbjct 274153 CTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAA 274094 Query 214222 GCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 | ||||| ||| || |||| |||| | ||| | || | |||||||| Sbjct 274093 GAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTC 274042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931379900535040