Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 113 8e-20
seq1473 89.7 1e-12
>seq11759
Length=791511
Score = 113 bits (124), Expect = 8e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189
||| ||||| ||| |||| | ||||||||| || ||||| ||| | || ||| |||
Sbjct 466072 GCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAG 466131
Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249
|||||||||| || | || |||||||||||||| | || || || ||||| |||||
Sbjct 466132 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAA 466191
Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309
| ||| || || || |||||||| || | ||| || | | || || || | ||
Sbjct 466192 TACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTGC 466251
Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
||||| ||||||||| || ||||||||
Sbjct 466252 AATCCACCTAAGCGCCCAATCGGCCTTCTT 466281
>seq1473
Length=538379
Score = 89.7 bits (98), Expect = 1e-12
Identities = 305/472 (65%), Gaps = 19/472 (4%)
Strand=Plus/Minus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
|||| || |||||| || || || ||||| || ||| ||| || |||| | | ||
Sbjct 274505 ACTCGCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATC 274446
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || | |||| ||| || || | || | ||| | | | |||| ||||| ||
Sbjct 274445 TCCTCAGCGCCAGTGTTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGT 274386
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCC 213989
|| | |||||||||||||| || || | | ||||| ||||| || || | ||
Sbjct 274385 TCGAGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCG 274326
Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049
||||||||| || || | ||||| || |||||||||| || |||||||| ||
Sbjct 274325 GTGCTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCG 274266
Query 214050 ATATACG------AGC--CGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGG 214101
||| ||| || |||| | ||| || ||| |||| || || ||||| |
Sbjct 274265 ATAAACGTATTCTTGCTTCGGATG----CAG--TGAACATTGAGA--CCGATCCCACCCG 274214
Query 214102 CGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCAT 214161
||| || ||||||| || || | | | || || || || | || ||||| |
Sbjct 274213 CGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATATATACCCTCGATACTGTCGT 274154
Query 214162 CTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAA 214221
|| | | | ||||| || ||||| || | ||| || | || |||| || ||||
Sbjct 274153 CTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTAAGGCGTCCCAGCATTAAAAA 274094
Query 214222 GCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273
| ||||| ||| || |||| |||| | ||| | || | ||||||||
Sbjct 274093 GAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAGATTATAGGTCTC 274042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931379900535040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |