Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11759 86.0 7e-12 >seq11759 Length=791511 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 ||| | ||||| ||||| | || ||| ||| |||||||| | ||||| | | ||| Sbjct 466314 TTTAACGCCATTCAAACGTTGCCGTGTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGG 466255 Query 65050 TTTG---ACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAG 65106 ||| | | |||| | | ||| ||||||||| || | ||||| || || || Sbjct 466254 ATTGCAAATAAAAAGGCAC---CCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAA 466198 Query 65107 GGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCAT 65165 || | ||||| || || ||||| ||| | |||| ||| | |||||||| |||||||| Sbjct 466197 GGCGTATTCTTTTCTGGTTCATT-TGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCAT 466139 Query 65166 GCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTT 65225 ||| ||||| ||| ||||| || || ||||| || || |||||| ||| || Sbjct 466138 GCCTGGCCTCACCTTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGATTT 466079 Query 65226 TGC 65228 ||| Sbjct 466078 TGC 466076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596471680557280