Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq11759 118 2e-21 seq7336 86.0 9e-12 >seq11759 Length=791511 Score = 118 bits (130), Expect = 2e-21 Identities = 346/529 (65%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| ||||| | ||||| |||| || | || |||||||| || | Sbjct 466073 CATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGG 466132 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||| | || || ||||| || || || || || || |||||||||| Sbjct 466133 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAATGAACCAGAAAAGAAT 466192 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAAC-TG--TATTTATTGCTC 18334 | || |||||| |||||||| | | | || || | || | |||||| | Sbjct 466193 ACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCGTAGGGTGCCTTTTTATTTG-C 466251 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||| | | ||||| || | | | |||||| | | | || || Sbjct 466252 A--ATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCG 466309 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 ||||||| | || ||| | | ||| || | || || ||||| | | ||| ||| Sbjct 466310 TTAAACAGAAAGTCGCGTTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTAC 466369 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||||||||| ||| |||| | || | || | | |||||| | | |||||||||| Sbjct 466370 ATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATAAAAACAACGAGCCTCGGGA 466429 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTA--CCAAATTCTCATTAACTATACCGTCAGCAG 18572 ||||| |||| || |||| ||| | | ||| |||||||| || || ||| | Sbjct 466430 ATTTGAACCTCGTTACAAAA--ATTCAAAGTTAGATTTTCATTAACGATGCCATCACTGG 466487 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 |||||| || ||||| ||||| |||||| || ||| ||| || || | | || Sbjct 466488 CTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCCATCATTAAGGCTTTCCC 466547 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 | ||| | ||| || | |||||||||||| || ||||| ||||| Sbjct 466548 AGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCAGAAAGA 466596 >seq7336 Length=62802 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || | || || || Sbjct 18774 AATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAG 18715 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||||| ||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 18714 TGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 18655 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | |||||||||||| | || || | || | || || ||||| Sbjct 18654 ACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAA 18595 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || ||| ||| | || || ||| | || ||||| || |||| || Sbjct 18594 TAT-TCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGAGG 18547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731751872359600