Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq7000 113 9e-20
seq1039 100 6e-16
seq7336 98.7 2e-15
>seq7000
Length=1252665
Score = 113 bits (124), Expect = 9e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| ||||||||||| | ||| |||| |||||||| || |||||||| || | | |
Sbjct 319622 ATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGC 319681
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
||||| || || || || || || || || || || ||| || ||||| ||||||
Sbjct 319682 TGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGAA 319741
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||| || || ||||| || ||||| || || | ||||| | ||| ||||||
Sbjct 319742 TCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGC 319801
Query 192535 AT 192536
||
Sbjct 319802 AT 319803
>seq1039
Length=57342
Score = 100 bits (110), Expect = 6e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || |||||||| | || || |||| ||||| || || ||||||||||| ||||
Sbjct 41548 GATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCG 41607
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||||| || ||||| || || || || ||||| || || || ||||| ||| ||
Sbjct 41608 TTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGA 41667
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| || || || || || ||||| || || ||||||| || || | |||||||||
Sbjct 41668 GTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTG 41727
Query 192534 CAT 192536
|||
Sbjct 41728 CAT 41730
Score = 84.2 bits (92), Expect = 4e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386
|| ||||| | ||| | ||| ||| || || || || || || | || || |||| ||
Sbjct 49581 ACCAAATGCAGAGTTGACTCCTTTTGA-ATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523
Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446
||| || || ||||||||||| |||| ||||| || ||||| || || || || |||||
Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 49463
Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|| || || ||||| ||| || || || || || || || ||||| || ||
Sbjct 49462 AATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 49403
Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | || || | ||||| |||||
Sbjct 49402 CCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
>seq7336
Length=62802
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/191 (72%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406
|||| || |||||||| || || | || || | || || || || ||||| || ||||
Sbjct 18585 CTTTTGA-ATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGA 18643
Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466
| | | |||||||| ||||||||||| ||||| ||||| ||||| |||||| ||
Sbjct 18644 TAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCT 18703
Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526
|| ||||| | || || || || || |||||||| ||||| | || |||| ||
Sbjct 18704 CGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAA 18763
Query 192527 ATATCTGCATT 192537
| || ||||||
Sbjct 18764 AAATTTGCATT 18774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984314370161850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |