Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7000 113 9e-20 seq1039 100 6e-16 seq7336 98.7 2e-15 >seq7000 Length=1252665 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||||||||| | ||| |||| |||||||| || |||||||| || | | | Sbjct 319622 ATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACGC 319681 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || || || || || || || ||| || ||||| |||||| Sbjct 319682 TGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGAA 319741 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || ||||| || ||||| || || | ||||| | ||| |||||| Sbjct 319742 TCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTGC 319801 Query 192535 AT 192536 || Sbjct 319802 AT 319803 >seq1039 Length=57342 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || |||||||| | || || |||| ||||| || || ||||||||||| |||| Sbjct 41548 GATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCG 41607 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||| || ||||| || || || || ||||| || || || ||||| ||| || Sbjct 41608 TTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATTGA 41667 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || ||||| || || ||||||| || || | ||||||||| Sbjct 41668 GTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTG 41727 Query 192534 CAT 192536 ||| Sbjct 41728 CAT 41730 Score = 84.2 bits (92), Expect = 4e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 || ||||| | ||| | ||| ||| || || || || || || | || || |||| || Sbjct 49581 ACCAAATGCAGAGTTGACTCCTTTTGA-ATGTTGTAGTCGGACAGGGTGCGACCATCTTC 49523 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||| || || ||||||||||| |||| ||||| || ||||| || || || || ||||| Sbjct 49522 CAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTG 49463 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || || ||||| ||| || || || || || || || ||||| || || Sbjct 49462 AATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTT 49403 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || | ||||| ||||| Sbjct 49402 CCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 >seq7336 Length=62802 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || |||||||| || || | || || | || || || || ||||| || |||| Sbjct 18585 CTTTTGA-ATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGA 18643 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | |||||||| ||||||||||| ||||| ||||| ||||| |||||| || Sbjct 18644 TAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCT 18703 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || ||||| | || || || || || |||||||| ||||| | || |||| || Sbjct 18704 CGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAA 18763 Query 192527 ATATCTGCATT 192537 | || |||||| Sbjct 18764 AAATTTGCATT 18774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984314370161850