Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq7000 109 1e-18
seq7336 86.0 1e-11
>seq7000
Length=1252665
Score = 109 bits (120), Expect = 1e-18
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| ||||| ||||| || ||| | || |||||||| || ||||||||||| | |
Sbjct 319621 AATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACG 319680
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||||||||| || || || || || || || || || ||| || ||||| ||||
Sbjct 319681 CTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGA 319740
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| || | ||| || || ||||| || ||||| || || | ||||| | || |||||
Sbjct 319741 ATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTG 319800
Query 172067 CAT 172069
|||
Sbjct 319801 CAT 319803
>seq7336
Length=62802
Score = 86.0 bits (94), Expect = 1e-11
Identities = 166/244 (68%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 171827 TTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGA 171886
||||||| | | || || |||| |||| || || | ||| | || | ||| ||
Sbjct 18532 TTTTAGTA-CTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTG 18590
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||||||||| || || | | || |||| || || || ||||| || || || | |
Sbjct 18591 AATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCG 18650
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||||| || ||||||||||| ||||| ||||| ||||| |||||| || || |
Sbjct 18651 TTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGA 18710
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| | || || || || || |||||||| ||||| | || |||| || || ||
Sbjct 18711 ATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTG 18770
Query 172067 CATT 172070
||||
Sbjct 18771 CATT 18774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904987433239800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |