Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7000 109 1e-18 seq7336 86.0 1e-11 >seq7000 Length=1252665 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| ||||| || ||| | || |||||||| || ||||||||||| | | Sbjct 319621 AATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAAAATAAGACG 319680 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || || || || || || || || ||| || ||||| |||| Sbjct 319681 CTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATAGA 319740 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | ||| || || ||||| || ||||| || || | ||||| | || ||||| Sbjct 319741 ATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCACAAAAATCTG 319800 Query 172067 CAT 172069 ||| Sbjct 319801 CAT 319803 >seq7336 Length=62802 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/244 (68%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 171827 TTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGA 171886 ||||||| | | || || |||| |||| || || | ||| | || | ||| || Sbjct 18532 TTTTAGTA-CTTCATGCCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTG 18590 Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||| || || | | || |||| || || || ||||| || || || | | Sbjct 18591 AATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCG 18650 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || ||||||||||| ||||| ||||| ||||| |||||| || || | Sbjct 18651 TTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGA 18710 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | || || || || || |||||||| ||||| | || |||| || || || Sbjct 18711 ATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTG 18770 Query 172067 CATT 172070 |||| Sbjct 18771 CATT 18774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904987433239800