Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq9163 118 3e-21
seq10020 95.1 4e-14
seq1473 86.0 2e-11
>seq9163
Length=740926
Score = 118 bits (130), Expect = 3e-21
Identities = 232/338 (69%), Gaps = 4/338 (1%)
Strand=Plus/Minus
Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621
|| ||| ||| |||||| ||| || | ||||||||| || ||||| ||| || |||
Sbjct 496259 AACCATTATGGATTCCATGGCCTTCATCAGACGACGCTGGATGTAACCGGTTTCAGCTGT 496200
Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681
|| |||||||||||||| | ||| ||||||||||||| || |||||||| | |||
Sbjct 496199 CTTAACAGCTGTATCAATCAAACCCTCACGACCACCCATTGCGTGGAAGAAAAACTCGGT 496140
Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741
||| || || | | ||||| |||||||||| || | | |||||| | |||
Sbjct 496139 TGGTGTAAGACCGGCTAGGTAGGAGTTCTCAACGAAGCCTCTTGACTCGGGACCGTAGTC 496080
Query 302742 GAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800
| |||| |||| || || || || | || | | ||| |||| | || || || |
Sbjct 496079 -ATCTTGAATAAAATGGGGAAGAGTACGGTGCCTGAAACCGAATGGCACGCGTTTACCCT 496021
Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCAC-TGCCCTTG 302859
|||| |||||||| || | || | || | || || || ||| | || | |||||
Sbjct 496020 CAACATTCTGCTGCCCGACACAGGCGATAACTTGAGAGATGTTT-ATTCTCGAACCCTTC 495962
Query 302860 GAGCCAGCATTTACCATAATAACAAACCTGTTATTCTT 302897
|| || ||| ||||| ||| ||| |||||| |||
Sbjct 495961 GATCCTGCAACAACCATTATATTAAAATTGTTATGCTT 495924
Score = 105 bits (116), Expect = 2e-17
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 303607 TCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCA 303666
|||| || || ||| || ||| |||| ||| | |||||| ||||||||||||||||||
Sbjct 495181 TCAGCCTTTGTTTCAACAGATTGAGGCAAATGAAGATTCATTTCATCACCGTCAAAATCA 495122
Query 303667 GCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACA 303726
|| || ||||| ||| | | | |||| || || || | ||| || || ||
Sbjct 495121 GCGTTGTACGGTGAAGTGACGGACAAATTCAGACGAAATGT-TGACCATGG--CAAGACG 495065
Query 303727 CGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACG 303786
|| || |||||||||||||||||| |||||| || |||||||||||||||| ||
Sbjct 495064 CGCACTCGGTGACACATCATAGACATTTTGTGTAAGGTGGGCTGACGATTGAAAACAACA 495005
Query 303787 GGGTCACCGTTTAATACATGACGATGAAC 303815
|||| |||| | | ||| || | |||
Sbjct 495004 AAGTCATCGTTCAGCATATGGCGCTCAAC 494976
>seq10020
Length=388388
Score = 95.1 bits (104), Expect = 4e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
||||||||| | ||| ||| ||||| |||||||||||||| || | ||||||||||||
Sbjct 172391 TGCACCGTGGGCGATCTGACAGTCACGTTCCATTTCACCGAACCGTAAACCACCATCGCG 172450
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603
| | ||||| |||||||| ||||| | | || || ||||| ||
Sbjct 172451 ACTGCGGCCCTCCATGGGCTGACGGTTGAGAATTTGAACGGGTCCACGCGAGCGCGAGTG 172510
Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
||| |||| ||||||||||| | |||||||||| ||| ||||| | ||||||
Sbjct 172511 GATCTTGTCATCGACCATATGCTTCAAACGCTGGTAGTATGTAGGACCCAGGAAGAT 172567
Score = 84.2 bits (92), Expect = 6e-11
Identities = 114/156 (73%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893
|||| ||| | || ||||||||||| ||||| || || |||||||| || |||||||| |
Sbjct 173596 TCAGGTGGCCAATTGTCATACGACTAGGAATGGCGTGAGGATTGATAATAATGTCGGGAT 173655
Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATAATGTTTCCAATAGTTCC 251951
| || ||| ||||||||||||||| |||| || ||| | | | || | |
Sbjct 173656 GGACCCCCTCACAAGTGAAGGGCATATC---TTCCTGTCTGTAAAGGATGCCGCAGGTAC 173712
Query 251952 CTTT-TGTCCGTGACGAGAACTGAACTTATCACCAA 251986
|||| || |||||||| || ||||| |||||||
Sbjct 173713 CTTTCTGACCGTGACGCGAGGCAAACTTGTCACCAA 173748
>seq1473
Length=538379
Score = 86.0 bits (94), Expect = 2e-11
Identities = 240/358 (67%), Gaps = 14/358 (4%)
Strand=Plus/Minus
Query 155798 TCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACT 155857
||| ||||||||||| || ||| || ||| || | ||||| || |||| |||
Sbjct 274617 TCTACCTTCCGACTCGTACTTCGCGTAAAGCATTTCAAATTCCTCCCCCCAACAGTCAGC 274558
Query 155858 CAGTCCAGGGCACTTATCGGGG-CAAAACAGCGACCAAATTTTATTACC-GATT--ACAC 155913
|| || ||||| | || |||| | | | || | ||| | | |||| | | || |
Sbjct 274557 AAGACCGGGGCATTCATGGGGGTCCATAAAG-GTCCACAA---ACTACCTGCCTCAACTC 274502
Query 155914 GCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT 155973
||| ||| |||| ||| |||||| || ||| || |||| || |||||
Sbjct 274501 GCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCCT 274442
Query 155974 CATCGCC-GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCC 156032
|| |||| ||| |||||||||| ||| | || | | | ||| ||||| ||| ||
Sbjct 274441 CAGCGCCAGTG-TTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCG 274383
Query 156033 AGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTC 156089
||||| || ||||| ||| | | ||||| |||||||| ||||| ||||| ||
Sbjct 274382 AGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTG 274323
Query 156090 TTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146
| |||||||| | ||||| || | || ||| ||||| ||||||||||| ||||
Sbjct 274322 CTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCGA 274265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471569980027147
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |