Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9163 118 3e-21 seq10020 95.1 4e-14 seq1473 86.0 2e-11 >seq9163 Length=740926 Score = 118 bits (130), Expect = 3e-21 Identities = 232/338 (69%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || ||| ||| |||||| ||| || | ||||||||| || ||||| ||| || ||| Sbjct 496259 AACCATTATGGATTCCATGGCCTTCATCAGACGACGCTGGATGTAACCGGTTTCAGCTGT 496200 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 || |||||||||||||| | ||| ||||||||||||| || |||||||| | ||| Sbjct 496199 CTTAACAGCTGTATCAATCAAACCCTCACGACCACCCATTGCGTGGAAGAAAAACTCGGT 496140 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 ||| || || | | ||||| |||||||||| || | | |||||| | ||| Sbjct 496139 TGGTGTAAGACCGGCTAGGTAGGAGTTCTCAACGAAGCCTCTTGACTCGGGACCGTAGTC 496080 Query 302742 GAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCAT 302800 | |||| |||| || || || || | || | | ||| |||| | || || || | Sbjct 496079 -ATCTTGAATAAAATGGGGAAGAGTACGGTGCCTGAAACCGAATGGCACGCGTTTACCCT 496021 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCAC-TGCCCTTG 302859 |||| |||||||| || | || | || | || || || ||| | || | ||||| Sbjct 496020 CAACATTCTGCTGCCCGACACAGGCGATAACTTGAGAGATGTTT-ATTCTCGAACCCTTC 495962 Query 302860 GAGCCAGCATTTACCATAATAACAAACCTGTTATTCTT 302897 || || ||| ||||| ||| ||| |||||| ||| Sbjct 495961 GATCCTGCAACAACCATTATATTAAAATTGTTATGCTT 495924 Score = 105 bits (116), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 303607 TCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCA 303666 |||| || || ||| || ||| |||| ||| | |||||| |||||||||||||||||| Sbjct 495181 TCAGCCTTTGTTTCAACAGATTGAGGCAAATGAAGATTCATTTCATCACCGTCAAAATCA 495122 Query 303667 GCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACA 303726 || || ||||| ||| | | | |||| || || || | ||| || || || Sbjct 495121 GCGTTGTACGGTGAAGTGACGGACAAATTCAGACGAAATGT-TGACCATGG--CAAGACG 495065 Query 303727 CGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACG 303786 || || |||||||||||||||||| |||||| || |||||||||||||||| || Sbjct 495064 CGCACTCGGTGACACATCATAGACATTTTGTGTAAGGTGGGCTGACGATTGAAAACAACA 495005 Query 303787 GGGTCACCGTTTAATACATGACGATGAAC 303815 |||| |||| | | ||| || | ||| Sbjct 495004 AAGTCATCGTTCAGCATATGGCGCTCAAC 494976 >seq10020 Length=388388 Score = 95.1 bits (104), Expect = 4e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||||||| | ||| ||| ||||| |||||||||||||| || | |||||||||||| Sbjct 172391 TGCACCGTGGGCGATCTGACAGTCACGTTCCATTTCACCGAACCGTAAACCACCATCGCG 172450 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | | ||||| |||||||| ||||| | | || || ||||| || Sbjct 172451 ACTGCGGCCCTCCATGGGCTGACGGTTGAGAATTTGAACGGGTCCACGCGAGCGCGAGTG 172510 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| |||| ||||||||||| | |||||||||| ||| ||||| | |||||| Sbjct 172511 GATCTTGTCATCGACCATATGCTTCAAACGCTGGTAGTATGTAGGACCCAGGAAGAT 172567 Score = 84.2 bits (92), Expect = 6e-11 Identities = 114/156 (73%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893 |||| ||| | || ||||||||||| ||||| || || |||||||| || |||||||| | Sbjct 173596 TCAGGTGGCCAATTGTCATACGACTAGGAATGGCGTGAGGATTGATAATAATGTCGGGAT 173655 Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATAATGTTTCCAATAGTTCC 251951 | || ||| ||||||||||||||| |||| || ||| | | | || | | Sbjct 173656 GGACCCCCTCACAAGTGAAGGGCATATC---TTCCTGTCTGTAAAGGATGCCGCAGGTAC 173712 Query 251952 CTTT-TGTCCGTGACGAGAACTGAACTTATCACCAA 251986 |||| || |||||||| || ||||| ||||||| Sbjct 173713 CTTTCTGACCGTGACGCGAGGCAAACTTGTCACCAA 173748 >seq1473 Length=538379 Score = 86.0 bits (94), Expect = 2e-11 Identities = 240/358 (67%), Gaps = 14/358 (4%) Strand=Plus/Minus Query 155798 TCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACT 155857 ||| ||||||||||| || ||| || ||| || | ||||| || |||| ||| Sbjct 274617 TCTACCTTCCGACTCGTACTTCGCGTAAAGCATTTCAAATTCCTCCCCCCAACAGTCAGC 274558 Query 155858 CAGTCCAGGGCACTTATCGGGG-CAAAACAGCGACCAAATTTTATTACC-GATT--ACAC 155913 || || ||||| | || |||| | | | || | ||| | | |||| | | || | Sbjct 274557 AAGACCGGGGCATTCATGGGGGTCCATAAAG-GTCCACAA---ACTACCTGCCTCAACTC 274502 Query 155914 GCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCT 155973 ||| ||| |||| ||| |||||| || ||| || |||| || ||||| Sbjct 274501 GCTTCATGAATAGATCGGGAACCCAAAGTGCGAGGAAGAGATCCCGAGCGCGAATCTCCT 274442 Query 155974 CATCGCC-GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCC 156032 || |||| ||| |||||||||| ||| | || | | | ||| ||||| ||| || Sbjct 274441 CAGCGCCAGTG-TTCTTCCGTAACTCCACAAACTGCAGTACATCCGGATGCCATGGTTCG 274383 Query 156033 AGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTC 156089 ||||| || ||||| ||| | | ||||| |||||||| ||||| ||||| || Sbjct 274382 AGATAGATGGCAAAGGCACCGGGTCGTTTGTTGCCTCCCTGATCGACATAACGAGCGGTG 274323 Query 156090 TTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146 | |||||||| | ||||| || | || ||| ||||| ||||||||||| |||| Sbjct 274322 CTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCCCCATTGGTTCCAGCGA 274265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471569980027147