Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11759 131 2e-24 seq8051 104 3e-16 seq6979 104 3e-16 seq6965 104 3e-16 seq6923 104 3e-16 seq347 104 3e-16 seq11400 86.0 8e-11 >seq11759 Length=791511 Score = 131 bits (144), Expect = 2e-24 Identities = 201/282 (71%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| |||||||||| || || ||||||| |||||| |||||||| || |||||| Sbjct 466094 CCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 466153 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||||||| || ||| | || || || || || || || | ||| || ||||| || | Sbjct 466154 TTGAGCCAGAAAATG--GAAGCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGA 466211 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCATCGC 869355 | | | || |||||||| ||| || ||| | | ||| |||||| | | ||| Sbjct 466212 ACGCCACCAGACGCTCGGCGTAGG-GT----GCCTTTTTATTTGCAATCCACCTAAGCGC 466266 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 ||| |||||||| || || |||||| ||| | |||||| ||| || ||| Sbjct 466267 CCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCG 466326 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||| || |||||||| ||||| |||||||| || || || Sbjct 466327 TTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTA 466368 >seq8051 Length=39876 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 27647 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 27703 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| | | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 27704 CGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 27763 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| | ||||||||| Sbjct 27764 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGTA 27823 Query 1254545 GATG 1254548 |||| Sbjct 27824 GATG 27827 >seq6979 Length=33379 Score = 104 bits (114), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATC 1254404 |||| || ||| ||| | ||| ||||| || ||||||||||| || |||| || Sbjct 6457 GCCAACTCACCGGGCAGCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTC 6516 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 | || |||||| | ||||||| ||||| | |||| | | || || |||| ||| Sbjct 6517 GATTT---CTTGTTATAATGCGCCAAACGGCTCGATTCGGCGGCAATCCGTTCGAAGATG 6573 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 || || ||||| |||||||||| |||||||| ||| ||||||||| ||| |||||| Sbjct 6574 TCATTCACAAAGGAGTTCATGATCGACATCGCCTTTGATGAGATGCCCGTGTCTGGGTGC 6633 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 || || | || ||||||||| Sbjct 6634 ACTTGACGCAATACTTTGTAGATG 6657 >seq6965 Length=3331 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||||||||| || |||| ||| || |||||| | || Sbjct 1363 CAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 1307 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| |||| | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 1306 CGCCAACCGGCTCGACTCGGCGGCAATCCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 1247 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||| ||||||||| ||| || |||||||| | ||||||||| Sbjct 1246 TATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGATGCACCTGACGCAACACCTTGTA 1187 Query 1254545 GATG 1254548 |||| Sbjct 1186 GATG 1183 >seq6923 Length=39300 Score = 104 bits (114), Expect = 3e-16 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGC 1254399 || |||||| || || ||| | ||| ||||| || ||||| ||||| || |||| Sbjct 1163 GCTTGGCCAACTCACCCGGCAGCAGCAGACGCACAGCAGTCTGAATCTCCCTGCTCGTGA 1222 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 ||| || |||||| | ||||||| |||| | ||||| | | ||||| |||| Sbjct 1223 TCGTCGACTT---CTTGTTGTAATGCGCCAACCGGCTCGACTCGGCGGCAATGCGCTCGA 1279 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 |||||||| || || |||||||| | |||||||| ||| |||||||| ||| | Sbjct 1280 AGATGTCGTTCACGAAGGAGTTCATTATCGACATCGCCTTCGACGAGATGCCTGTGTCCG 1339 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| | ||||||||||||| Sbjct 1340 GATGCACCTGACGCAACACCTTGTAGATG 1368 >seq347 Length=8301 Score = 104 bits (114), Expect = 3e-16 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||| ||||| || |||| ||| || |||||| |||| Sbjct 2001 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 2057 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| | | | ||||| | | || || |||| |||||||| || || |||||||| Sbjct 2058 CGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 2117 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || |||||||| ||| ||||||||| ||| ||||||||||| | ||||||||| Sbjct 2118 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGTA 2177 Query 1254545 GATG 1254548 |||| Sbjct 2178 GATG 2181 >seq11400 Length=285509 Score = 86.0 bits (94), Expect = 8e-11 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 92600 CTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGA 92658 |||||| |||||||| || || ||| ||||| || | || ||| || |||| || | Sbjct 145166 CTCGGCAATCTGGCGTGTCAGACGCTCTTGCACTTGCAGACG-TCGCGAGAACACCTCCA 145108 Query 92659 CGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGG 92718 | || | || |||||| |||| || || | ||| || |||| ||||||||||| | Sbjct 145107 CAATCCTCGCGATCTTACTCAAACCAATCACCCTTCCATTGGGTAGGTAGCCCAC-CGAT 145049 Query 92719 CCTTG-CCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGC 92777 || | ||||| || || | || ||||||||| ||||| || || | |||| ||| || Sbjct 145048 ACTCGTCCCATGAACGGGATCATATGGTGCTCACACATAGAAAACATCTCGATGTCCCGT 144989 Query 92778 ACGATCACCA 92787 || | ||||| Sbjct 144988 ACAACCACCA 144979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106061608647527