Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 131 2e-24
seq8051 104 3e-16
seq6979 104 3e-16
seq6965 104 3e-16
seq6923 104 3e-16
seq347 104 3e-16
seq11400 86.0 8e-11
>seq11759
Length=791511
Score = 131 bits (144), Expect = 2e-24
Identities = 201/282 (71%), Gaps = 11/282 (4%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||| |||||||||| || || ||||||| |||||| |||||||| || ||||||
Sbjct 466094 CCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 466153
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297
|||||||| || ||| | || || || || || || || | ||| || ||||| || |
Sbjct 466154 TTGAGCCAGAAAATG--GAAGCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGA 466211
Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCATCGC 869355
| | | || |||||||| ||| || ||| | | ||| |||||| | | |||
Sbjct 466212 ACGCCACCAGACGCTCGGCGTAGG-GT----GCCTTTTTATTTGCAATCCACCTAAGCGC 466266
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415
||| |||||||| || || |||||| ||| | |||||| ||| || |||
Sbjct 466267 CCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCG 466326
Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457
||| || |||||||| ||||| |||||||| || || ||
Sbjct 466327 TTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTA 466368
>seq8051
Length=39876
Score = 104 bits (114), Expect = 3e-16
Identities = 134/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424
||| ||||| || ||||| ||||| || |||| ||| || |||||| ||||
Sbjct 27647 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 27703
Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484
||||| | | | ||||| | | || || |||| |||||||| || || ||||||||
Sbjct 27704 CGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 27763
Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| ||| ||||||||| ||| ||||||||||| | |||||||||
Sbjct 27764 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGTA 27823
Query 1254545 GATG 1254548
||||
Sbjct 27824 GATG 27827
>seq6979
Length=33379
Score = 104 bits (114), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATC 1254404
|||| || ||| ||| | ||| ||||| || ||||||||||| || |||| ||
Sbjct 6457 GCCAACTCACCGGGCAGCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTC 6516
Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464
| || |||||| | ||||||| ||||| | |||| | | || || |||| |||
Sbjct 6517 GATTT---CTTGTTATAATGCGCCAAACGGCTCGATTCGGCGGCAATCCGTTCGAAGATG 6573
Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524
|| || ||||| |||||||||| |||||||| ||| ||||||||| ||| ||||||
Sbjct 6574 TCATTCACAAAGGAGTTCATGATCGACATCGCCTTTGATGAGATGCCCGTGTCTGGGTGC 6633
Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548
|| || | || |||||||||
Sbjct 6634 ACTTGACGCAATACTTTGTAGATG 6657
>seq6965
Length=3331
Score = 104 bits (114), Expect = 3e-16
Identities = 134/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Minus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424
||| ||||| || ||||||||||| || |||| ||| || |||||| | ||
Sbjct 1363 CAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGACTT---CTTGTTGTAATG 1307
Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484
||||| |||| | ||||| | | || || |||| |||||||| || || ||||||||
Sbjct 1306 CGCCAACCGGCTCGACTCGGCGGCAATCCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 1247
Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| ||| ||||||||| ||| || |||||||| | |||||||||
Sbjct 1246 TATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGATGCACCTGACGCAACACCTTGTA 1187
Query 1254545 GATG 1254548
||||
Sbjct 1186 GATG 1183
>seq6923
Length=39300
Score = 104 bits (114), Expect = 3e-16
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGC 1254399
|| |||||| || || ||| | ||| ||||| || ||||| ||||| || ||||
Sbjct 1163 GCTTGGCCAACTCACCCGGCAGCAGCAGACGCACAGCAGTCTGAATCTCCCTGCTCGTGA 1222
Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
||| || |||||| | ||||||| |||| | ||||| | | ||||| ||||
Sbjct 1223 TCGTCGACTT---CTTGTTGTAATGCGCCAACCGGCTCGACTCGGCGGCAATGCGCTCGA 1279
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
|||||||| || || |||||||| | |||||||| ||| |||||||| ||| |
Sbjct 1280 AGATGTCGTTCACGAAGGAGTTCATTATCGACATCGCCTTCGACGAGATGCCTGTGTCCG 1339
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||| | |||||||||||||
Sbjct 1340 GATGCACCTGACGCAACACCTTGTAGATG 1368
>seq347
Length=8301
Score = 104 bits (114), Expect = 3e-16
Identities = 134/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424
||| ||||| || ||||| ||||| || |||| ||| || |||||| ||||
Sbjct 2001 CAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTT---CTTGTTGTAGTG 2057
Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484
||||| | | | ||||| | | || || |||| |||||||| || || ||||||||
Sbjct 2058 CGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCAT 2117
Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
|| |||||||| ||| ||||||||| ||| ||||||||||| | |||||||||
Sbjct 2118 GATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGTA 2177
Query 1254545 GATG 1254548
||||
Sbjct 2178 GATG 2181
>seq11400
Length=285509
Score = 86.0 bits (94), Expect = 8e-11
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 92600 CTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGA 92658
|||||| |||||||| || || ||| ||||| || | || ||| || |||| || |
Sbjct 145166 CTCGGCAATCTGGCGTGTCAGACGCTCTTGCACTTGCAGACG-TCGCGAGAACACCTCCA 145108
Query 92659 CGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGG 92718
| || | || |||||| |||| || || | ||| || |||| ||||||||||| |
Sbjct 145107 CAATCCTCGCGATCTTACTCAAACCAATCACCCTTCCATTGGGTAGGTAGCCCAC-CGAT 145049
Query 92719 CCTTG-CCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGC 92777
|| | ||||| || || | || ||||||||| ||||| || || | |||| ||| ||
Sbjct 145048 ACTCGTCCCATGAACGGGATCATATGGTGCTCACACATAGAAAACATCTCGATGTCCCGT 144989
Query 92778 ACGATCACCA 92787
|| | |||||
Sbjct 144988 ACAACCACCA 144979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106061608647527
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |