Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1039 154 1e-32 seq7336 120 3e-22 seq7187 105 6e-18 >seq1039 Length=57342 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || |||||||| || || ||||||||||| || || || | | Sbjct 41958 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41899 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || |||| | || || |||||||||||||| || || || || || || || Sbjct 41898 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 41839 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||||| |||||| | | | |||| || || ||| Sbjct 41838 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 41779 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| |||| ||||| || ||| Sbjct 41778 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41731 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || |||||||| || || ||||||||||| || || || | | Sbjct 42186 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42127 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || |||| | || || |||||||||||||| || || || || || || || Sbjct 42126 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42067 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||||| |||||| | | | |||| || || ||| Sbjct 42066 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42007 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| |||| ||||| || ||| Sbjct 42006 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 41959 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || ||||||||||| || || || | | Sbjct 42414 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 42355 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || |||| | || || |||||||||||||| || || || || || || || Sbjct 42354 GACTCAATAGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGCATTCCACCAGACCAG 42295 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || || ||||| |||||| | | | |||| || || ||| Sbjct 42294 CAACGATTGATCTTCGCAGGAAAGCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 42235 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| |||| ||||| || ||| Sbjct 42234 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42187 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || || || || || | || || || | | Sbjct 42642 ATGCAGATATTTGTTAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAGCCAAGT 42583 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || ||||||||||| || || || || || || || || Sbjct 42582 GACTCGATAGAGAACGTGAAGGCGAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 42523 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| || || || || |||||||||||| | | | |||| ||||| ||| Sbjct 42522 CAACGATTGATTTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCTTGTCTGATTACAAC 42463 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||||||||| |||| ||||| || ||| Sbjct 42462 ATTCAGAAGGAGTCGACGCTTCACTTGGTGCTGCGTTTGCGTGGTGGC 42415 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||||||||| || ||| | || || |||||||| ||||| || ||||| || || ||| | Sbjct 43102 TACGATGCAAATTTTTGTGAAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACC 43043 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 || ||||||| | || | || || ||||| |||||||| || || || || || || Sbjct 43042 CAGCGACACAATTGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGA 42983 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || ||||| | |||||||| ||||| ||| |||| ||| | | | |||| || || Sbjct 42982 CCAGCAACGCCTTATCTTTGCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTA 42923 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || || | ||| | ||| | || || || Sbjct 42922 CAACATTCAAAAGGAGTCAACCCTCCATCTTGTGCTTCGACTTCGTGGTGG 42872 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || |||||||| || || ||||||||||| || || || | | Sbjct 41730 ATGCAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 41671 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || |||| | || || ||||| |||||||| || || || || || || ||| Sbjct 41670 GACTCAATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 41611 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||| ||| | | | || ||||| ||| Sbjct 41610 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAAC 41551 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||||||||| || ||| | ||| Sbjct 41550 ATCCAGAAGGAATCGACCCTTCACCTTGTG 41521 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| ||||| || ||||| || ||||| || || | | Sbjct 49145 ATGCAAATCTTCGTGAAGACGCTTACCGGGAAGACTATCACCCTCGAGGTTGAGCCTAGT 49204 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || || ||||| |||||||| || || || || || ||||| Sbjct 49205 GATTCGATTGAGAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCGGATCAG 49264 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || |||||| |||| ||| | | | || || || ||| Sbjct 49265 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 49324 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| || ||||| ||| ||||| | || |||| || ||| Sbjct 49325 ATTCAAAAGGAGTCAACACTTCACCTGGTGCTTCGTCTGCGTGGTGGC 49372 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || ||||||||||| || || || | | Sbjct 49373 ATGCAAATATTCGTGAAGACCCTGACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGT 49432 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || |||||| |||||||| || || || || || || ||| Sbjct 49433 GACTCGATAGAGAATGTGAAGGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 49492 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || ||| |||| ||| | | | |||| || || ||| Sbjct 49493 CAACGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 49552 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||||||| || || || || |||||| Sbjct 49553 ATTCAAAAGGAGTCAACTCTGCATTTGGTG 49582 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || |||||||| || || || ||||| ||||| ||| ||| Sbjct 42870 ATGCAAATCTTTGTCAAGACTCTAACCGGCAAGACCATAACGCTGGAAGTTGAACCCAGT 42811 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | ||||| |||||||| || || || || || || || |||||| Sbjct 42810 GATTCGATTGAGAATGTAAAGGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGATCAA 42751 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||| |||| || | | | || || |||||| Sbjct 42750 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTCGCACTCTTTCTGACTATAAC 42691 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || ||| | ||| | ||| | || || || Sbjct 42690 ATTCAAAAGGAGTCAACGCTTCACCTCGTGCTTCGACTCCGTGGTGG 42644 Score = 107 bits (118), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||||||| ||||| || || || || || || ||| Sbjct 31754 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAAACAATCACACTGGAGGTGGAGCCCAGT 31695 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | |||| | || || ||||| ||||| || ||||| || || || || || Sbjct 31694 GATTCGATAGAGAATGTGAAGGCGAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAG 31635 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||||| || || ||| |||| ||| ||| |||| ||| || || Sbjct 31634 CAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGT---ACATTGTCTGACTAC 31578 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 ||||| ||||||||||| || || || | ||| | || | || |||||| || Sbjct 31577 AACATCCAAAAGGAATCCACCCTTCATCTTGTGCTTCGTCTTCGTGGAGGCTGA 31524 Score = 100 bits (110), Expect = 3e-16 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||| | || || ||||| || || || ||||| || ||| Sbjct 32211 GATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAG 32152 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | |||| | || || ||||| |||||||| || || || || || || || Sbjct 32151 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 32092 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTA 24879 ||||| |||||||||| || || ||| |||| ||| ||| |||| ||| || || Sbjct 32091 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGT---ACATTGTCTGACTA 32035 Query 24880 TAACATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| ||||||||||| || || || |||| Sbjct 32034 CAACATCCAAAAGGAATCCACCCTTCATCTTG 32003 >seq7336 Length=62802 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || || || || || | | Sbjct 18773 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGAGCCAAGT 18714 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | |||||| ||| |||||||||||||| |||||||| || |||||| Sbjct 18713 GATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCAA 18654 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| ||||| || ||| | ||||| | | | | | || || ||||| Sbjct 18653 CAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAAT 18594 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||||||||| || ||||| || |||| Sbjct 18593 ATTCAAAAGGAGTCAACACTCCATCTTG 18566 >seq7187 Length=4100 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||| | || || ||||| || || || ||||| || ||| Sbjct 843 GATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAG 784 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | |||| | || || ||||| |||||||| || || || || || || || Sbjct 783 TGATTCGATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCA 724 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTA 24879 ||||| |||||||||| || || ||| |||| ||| ||| |||| ||| || || Sbjct 723 GCAACGCCTGATCTTTGCGGGAAAGCAGTTGGAAGATGGTCGT---ACATTGTCTGACTA 667 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 ||||| ||||||||||| || || || | ||| | || | || |||||| || Sbjct 666 CAACATCCAAAAGGAATCCACCCTTCATCTTGTGCTTCGTCTTCGTGGAGGCTGA 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449823754932680