Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 154 2e-31
seq6979 136 6e-26
seq8051 129 9e-24
seq6965 129 9e-24
seq347 129 9e-24
>seq11759
Length=791511
Score = 154 bits (170), Expect = 2e-31
Identities = 235/330 (71%), Gaps = 11/330 (3%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|||||||| |||||||||| || || |||||| |||||| |||||||| || ||||||
Sbjct 466094 CCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 466153
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458
|||||||| || |||| || || || || || || || | ||| || ||||| || |
Sbjct 466154 TTGAGCCAGAAAATGG--AAGCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGA 466211
Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG--ATCCACTTCATCGC 794516
| | || || |||||||| || || ||| | || ||| |||||| | | |||
Sbjct 466212 ACGCCACCAGACGCTCGGC-GTAGGGT----GCCTTTTTATTTGCAATCCACCTAAGCGC 466266
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576
||| || ||||| || || | |||| ||| | |||||| ||| || |||
Sbjct 466267 CCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCG 466326
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
|| | || |||||||||||||| ||||| || || ||||| | || || || |||||
Sbjct 466327 TTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATTTCAGAATGAATGTT 466386
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||||| ||||| || | |||||||| ||
Sbjct 466387 TTCGACGGCGACTTGCATTCCATAAAAACA 466416
>seq6979
Length=33379
Score = 136 bits (150), Expect = 6e-26
Identities = 168/227 (74%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || |||||||| ||||| || || |||||| | |||| || ||| |||
Sbjct 6413 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTTGCCAACTCACCGGGCA 6472
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| ||||| || ||||||||||| | | | ||| || |||||||
Sbjct 6473 GCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGATTTCTTGTTATAAT 6532
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| |||| | |||| | | || || |||| ||||| || ||||| |||||||
Sbjct 6533 GCGCCAAACGGCTCGATTCGGCGGCAATCCGTTCGAAGATGTCATTCACAAAGGAGTTCA 6592
Query 1485650 TGATCGACATCG-ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695
|||||||||||| |||| | ||||||||| ||| |||||||| ||
Sbjct 6593 TGATCGACATCGCCTTTGAT-GAGATGCCCGTGTCTGGGTGCACTTG 6638
>seq8051
Length=39876
Score = 129 bits (142), Expect = 9e-24
Identities = 173/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || ||||| || ||||| || || |||||| | |||| || || |||
Sbjct 27583 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 27642
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| ||||| || ||||| ||||| ||| | ||| || |||||| |
Sbjct 27643 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 27702
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| | | | ||||| | | || || |||| |||||||| || || |||||||
Sbjct 27703 GCGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 27762
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||||||||||| || ||||||||| ||| ||||||||||| | ||||||||
Sbjct 27763 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGT 27822
Query 1485710 A 1485710
|
Sbjct 27823 A 27823
>seq6965
Length=3331
Score = 129 bits (142), Expect = 9e-24
Identities = 173/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || |||||||| ||||| || || |||||| | |||| || || |||
Sbjct 1427 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 1368
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| ||||| || ||||||||||| | | | ||| || ||||||
Sbjct 1367 GCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 1308
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| |||| | ||||| | | || || |||| |||||||| || || |||||||
Sbjct 1307 GCGCCAACCGGCTCGACTCGGCGGCAATCCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 1248
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
| |||||||||| || ||||||||| ||| || |||||||| | ||||||||
Sbjct 1247 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGATGCACCTGACGCAACACCTTGT 1188
Query 1485710 A 1485710
|
Sbjct 1187 A 1187
>seq347
Length=8301
Score = 129 bits (142), Expect = 9e-24
Identities = 173/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| || ||||| || ||||| || || |||||| | |||| || || |||
Sbjct 1937 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 1996
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| ||||| || ||||| ||||| ||| | ||| || |||||| |
Sbjct 1997 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 2056
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| | | | ||||| | | || || |||| |||||||| || || |||||||
Sbjct 2057 GCGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 2116
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||||||||||| || ||||||||| ||| ||||||||||| | ||||||||
Sbjct 2117 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGT 2176
Query 1485710 A 1485710
|
Sbjct 2177 A 2177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914849595639509
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |