Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11759 154 2e-31 seq6979 136 6e-26 seq8051 129 9e-24 seq6965 129 9e-24 seq347 129 9e-24 >seq11759 Length=791511 Score = 154 bits (170), Expect = 2e-31 Identities = 235/330 (71%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| |||||||||| || || |||||| |||||| |||||||| || |||||| Sbjct 466094 CCTTCGTCTCGACTGATCAGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTC 466153 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||| || |||| || || || || || || || | ||| || ||||| || | Sbjct 466154 TTGAGCCAGAAAATGG--AAGCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGA 466211 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG--ATCCACTTCATCGC 794516 | | || || |||||||| || || ||| | || ||| |||||| | | ||| Sbjct 466212 ACGCCACCAGACGCTCGGC-GTAGGGT----GCCTTTTTATTTGCAATCCACCTAAGCGC 466266 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || || | |||| ||| | |||||| ||| || ||| Sbjct 466267 CCAATCGGCCTTCTTAGCAACACACGGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCG 466326 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | || |||||||||||||| ||||| || || ||||| | || || || ||||| Sbjct 466327 TTCCATTGGATCCTTGACGTAGGTATCGATCAGAAGAGAGTACATTTCAGAATGAATGTT 466386 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| ||||| || | |||||||| || Sbjct 466387 TTCGACGGCGACTTGCATTCCATAAAAACA 466416 >seq6979 Length=33379 Score = 136 bits (150), Expect = 6e-26 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || ||| ||| Sbjct 6413 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTTGCCAACTCACCGGGCA 6472 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| | | | ||| || ||||||| Sbjct 6473 GCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGATTTCTTGTTATAAT 6532 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| | |||| | | || || |||| ||||| || ||||| ||||||| Sbjct 6533 GCGCCAAACGGCTCGATTCGGCGGCAATCCGTTCGAAGATGTCATTCACAAAGGAGTTCA 6592 Query 1485650 TGATCGACATCG-ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||||||||||| |||| | ||||||||| ||| |||||||| || Sbjct 6593 TGATCGACATCGCCTTTGAT-GAGATGCCCGTGTCTGGGTGCACTTG 6638 >seq8051 Length=39876 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 27583 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 27642 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 27643 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 27702 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| | | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 27703 GCGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 27762 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| | |||||||| Sbjct 27763 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGT 27822 Query 1485710 A 1485710 | Sbjct 27823 A 27823 >seq6965 Length=3331 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || |||||| | |||| || || ||| Sbjct 1427 TGTACTTGGTCACAGCCTTGGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 1368 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||||||||| | | | ||| || |||||| Sbjct 1367 GCAGCAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATTGTCGACTTCTTGTTGTAAT 1308 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| |||| | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 1307 GCGCCAACCGGCTCGACTCGGCGGCAATCCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 1248 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | |||||||||| || ||||||||| ||| || |||||||| | |||||||| Sbjct 1247 TTATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGATGCACCTGACGCAACACCTTGT 1188 Query 1485710 A 1485710 | Sbjct 1187 A 1187 >seq347 Length=8301 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || |||||| | |||| || || ||| Sbjct 1937 TGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTCGCCAACTCACCCGGCA 1996 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || ||||| ||||| ||| | ||| || |||||| | Sbjct 1997 GCAGCAGACGCACTGCAGTCTGAATCTCTCGGCTCGTGATAGTCGACTTCTTGTTGTAGT 2056 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| | | | ||||| | | || || |||| |||||||| || || ||||||| Sbjct 2057 GCGCCAACCTACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 2116 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || ||||||||| ||| ||||||||||| | |||||||| Sbjct 2117 TGATCGACATCGCCTTCGACGAGATGCCCGTGTCCGGGTGCACCTGGCGCAACACCTTGT 2176 Query 1485710 A 1485710 | Sbjct 2177 A 2177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914849595639509