Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 105 6e-18
seq7000 100 3e-16
>seq1039
Length=57342
Score = 105 bits (116), Expect = 6e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| ||||| || || || ||||| || || || ||| | || || | ||
Sbjct 42895 ATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCA-TCTTCCAACT 42953
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| ||||| | || || || |||||||| || || ||||| |||||||| ||||
Sbjct 42954 GCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCT 43013
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | ||||| |||||| |||| ||||| || | |||| ||||||||||
Sbjct 43014 TCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGG 43073
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || || ||||| |||||
Sbjct 43074 TTAGAGTCTTCACAAAAATTTGCAT 43098
Score = 102 bits (112), Expect = 8e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | |||||| || || || || ||||| || || || ||| | || || | ||
Sbjct 31551 ATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCA-TCTTCCAACT 31609
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| ||||| | || || || |||||||| || || ||||||||||| || ||||
Sbjct 31610 GCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCT 31669
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | ||| | || || |||||||||| || | |||| ||||||||||
Sbjct 31670 TCGCCTTCACATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGG 31729
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || ||||| ||||||||
Sbjct 31730 TTAGAGTCTTCACGAAGATCTGCAT 31754
>seq7000
Length=1252665
Score = 100 bits (110), Expect = 3e-16
Identities = 144/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520
||| ||||| ||||| ||||||||||| || | ||| ||||| | ||||||
Sbjct 319606 GGTTGACTCCTTCTGAATATTGTAATCAG--ATAAGGAACGTCCATCCTCCAATTGCTTG 319663
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| || |||| || ||||| ||||| || || || || |||||||| ||||| |
Sbjct 319664 CCAGCAAAAATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCC 319723
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | ||||| | |||| || || || || | |||| ||||||||||| |||
Sbjct 319724 TTCACATTCTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGA 319783
Query 133641 GTTTTTACGAAAATCTGCATG 133661
||||| || ||||||||||||
Sbjct 319784 GTTTTCACAAAAATCTGCATG 319804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483341452518440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |