Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9163 98.7 2e-15 >seq9163 Length=740926 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 304885 TTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AGGC 304941 ||||||||||||| | ||||| || || || || || ||| | || | ||| |||| Sbjct 494570 TTTACAATATCATGTGGCAACCTTGATTGACAACGATATTCCCGG---TCTGCCAAAGGC 494626 Query 304942 ATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGG 305001 | ||| | ||||| |||||| ||||| |||| ||||||| | ||||| || | || Sbjct 494627 AATTCAGAAGTCTGGAAGACCTCTAAAGTCAATTAAGCAACGCCTAAAAGGAAAGGCCGG 494686 Query 305002 TCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCAC 305061 || || |||||||| | ||||| || |||||||||||| || ||| ||| || || Sbjct 494687 ACGCATACGAGGTAACTTGATGGGGAAGCGTGTTGATTTTTCCGCTCGAACTGTTATAAC 494746 Query 305062 ACCTGA 305067 |||| Sbjct 494747 TGCTGA 494752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186613129501891