Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1039 98.7 7e-16 seq7187 91.5 1e-13 >seq1039 Length=57342 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || || || ||| ||||| |||||||| ||||| Sbjct 49371 CCACCACGCAGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAA 49312 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| ||||| || ||||| ||||||||||||||||| | || Sbjct 49311 AGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGG 49252 Query 33643 ACACCTTCTTTGTC 33656 | ||| || ||||| Sbjct 49251 ATACCCTCCTTGTC 49238 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| | |||||| || || || ||| || || ||||||||||| || Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || ||||| || |||||||| || ||||| ||| | || Sbjct 42476 AAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGA 42535 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || ||| ||| || | || | | ||| |||| ||||| Sbjct 42536 ATGCCCTCCTTATCTTGGATCTTCGCCTTC-ACGTTCTCTATCGAGTCACTTGGCTCCAC 42594 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||||| ||||| ||||||||| Sbjct 42595 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCATA 42643 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | ||| || ||| || ||||| |||||||| || || Sbjct 31984 CCACCACGAAGACGGAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 32043 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || ||||| || ||||| ||||| |||| || ||||| ||| | || Sbjct 32044 AATGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGA 32103 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| ||| |||| ||| || | | || || | ||||| Sbjct 32104 ATGCCCTCCTTGTCTTGAATCTTCGCCTTCA-CATTCTCTATCGAATCACTGGGCTCCAC 32162 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || ||||| || || ||||||||||| Sbjct 32163 TTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 32210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | ||| || ||| || ||||| |||||||| || || | ||| || | Sbjct 31539 ACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACC 31598 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| |||| || ||||| ||| | || | ||||| || Sbjct 31599 ATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTT 31658 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||| ||| |||| ||| || | | || || | ||||| || | |||| Sbjct 31659 ATCTTGAATCTTCGCCTTCA-CATTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGA 31717 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || |||| || || || ||||||||||| Sbjct 31718 TTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 31754 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||| || || || || | || ||||| || || || ||||| Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| || || || ||| | || | || || ||||| ||| ||| ||| |||| Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTC-ACATT 41658 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | | ||| || | ||||| || | ||| || || || || |||| ||| || || Sbjct 41659 CTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCAC 41718 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 41719 AAATATCTGCAT 41730 >seq7187 Length=4100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | ||| || ||| || ||||| |||||||| || || | ||| || | Sbjct 627 ACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACC 686 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| |||| || ||||| ||| | || | || || || Sbjct 687 ATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGGAATGCCCTCCTT 746 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| ||| |||| ||| || | | || || | ||||| || | |||| Sbjct 747 GTCTTGAATCTTCGCCTTCA-CATTCTCTATCGAATCACTGGGCTCCACTTCCAGTGTGA 805 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || ||||| || || ||||||||||| Sbjct 806 TTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328651396163520