Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1039 105 2e-17 seq7187 95.1 3e-14 seq7000 93.3 1e-13 seq7336 87.8 4e-12 >seq1039 Length=57342 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||||| || || || || || || |||| ||||| |||| Sbjct 41727 CAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGTGAC 41668 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || || || ||| || ||| ||| Sbjct 41667 TCAATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAACAA 41608 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || ||||||||||||||||| | ||| | | ||||||||| || Sbjct 41607 CGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAACATC 41548 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || ||||||||||| Sbjct 41547 CAGAAGGAATCGACCCTTCACCTTGT 41522 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| |||| |||||| |||||| | || Sbjct 43083 AAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGCGACACAATTGAGAAT 43024 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| |||||| ||| | |||||||| Sbjct 43023 GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAACGCCTTATCTTT 42964 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| |||| || | || |||||| | || || ||||| Sbjct 42963 GCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAACATTCAAAAGGAGTCA 42904 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| | ||||||| Sbjct 42903 ACCCTCCATCTTGTGCTTCGACTTCG 42878 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || ||| ||| | || ||||| || |||||| Sbjct 31670 AAGATTCAAGATAAGGAAGGCATTCCACCAGACCAGCAACGCCTGATCTTTGCGGGAAAG 31611 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| | || ||| | || |||||| |||| || || || || ||||| Sbjct 31610 CAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAGGAATCCACCCTTCAT 31551 Query 206374 CTTGT 206378 ||||| Sbjct 31550 CTTGT 31546 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA---AGTTCTGACACAGTCGAA 206241 || ||| | || || ||||| ||||| |||||||||| ||| | | || ||| Sbjct 32195 AAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGTGATTCGATAGA-GAA 32137 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 | || ||| ||||||||||| || || || ||| || ||| ||| | || ||| Sbjct 32136 T--GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGCAACGCCTGATC 32079 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || |||||||||||||||||||| | || ||| | || |||||| |||| || || Sbjct 32078 TTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAGGAA 32019 Query 206362 TCTACTCTTCACCTTGT 206378 || || ||||| ||||| Sbjct 32018 TCCACCCTTCATCTTGT 32002 >seq7187 Length=4100 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA---AGTTCTGACACAGTCGAA 206241 || ||| | || || ||||| ||||| |||||||||| ||| | | || ||| Sbjct 827 AAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGTGATTCGATAGA-GAA 769 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 | || ||| ||||||||||| || || || ||| || ||| ||| | || ||| Sbjct 768 T--GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGCAACGCCTGATC 711 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || |||||||||||||||||||| | || ||| | || |||||| |||| || || Sbjct 710 TTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAGGAA 651 Query 206362 TCTACTCTTCACCTTGT 206378 || || ||||| ||||| Sbjct 650 TCCACCCTTCATCTTGT 634 >seq7000 Length=1252665 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| |||||| | || || ||| ||| || Sbjct 319800 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCCGAT 319741 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| |||||||| || || || || ||| ||| ||| || Sbjct 319740 TCTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAACAG 319681 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || ||||| ||||| |||||| | | || | |||||||| | Sbjct 319680 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 319621 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 319620 CAGAAGGAGTCAACCCTTCACCTTGT 319595 >seq7336 Length=62802 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| ||||| | |||||| || || || ||||| || || | ||||||||| | | || Sbjct 18552 TCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGT 18611 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || || || || | |||||| |||||||||||||||||||||||| Sbjct 18612 CCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 18657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181621969360651