Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 105 2e-17
seq7187 95.1 3e-14
seq7000 93.3 1e-13
seq7336 87.8 4e-12
>seq1039
Length=57342
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||||||| || ||||| || || || || || || |||| ||||| ||||
Sbjct 41727 CAGATATTTGTGAAGACGCTAACTGGGAAGACTATTACGCTGGAGGTGGAGCCGAGTGAC 41668
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||||||||| || || || ||| || ||| |||
Sbjct 41667 TCAATAGAGAATGTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAACAA 41608
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||| || || ||||||||||||||||| | ||| | | ||||||||| ||
Sbjct 41607 CGATTGATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAACATC 41548
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| || || || |||||||||||
Sbjct 41547 CAGAAGGAATCGACCCTTCACCTTGT 41522
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || ||||| ||||| |||| |||||| |||||| | ||
Sbjct 43083 AAGACTCTAACCGGCAAAACAATCACGCTGGAGGTGGAACCCAGCGACACAATTGAGAAT 43024
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| || || || ||| |||||| ||| | ||||||||
Sbjct 43023 GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCGGACCAGCAACGCCTTATCTTT 42964
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||||||||||||||| |||| || | || |||||| | || || |||||
Sbjct 42963 GCGGGGAAGCAGTTGGAAGATGGTCGGACCCTGTCTGACTACAACATTCAAAAGGAGTCA 42904
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || || ||||| | |||||||
Sbjct 42903 ACCCTCCATCTTGTGCTTCGACTTCG 42878
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| || ||||| ||| || ||| ||| | || ||||| || ||||||
Sbjct 31670 AAGATTCAAGATAAGGAAGGCATTCCACCAGACCAGCAACGCCTGATCTTTGCGGGAAAG 31611
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|||||||||||||| | || ||| | || |||||| |||| || || || || |||||
Sbjct 31610 CAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAGGAATCCACCCTTCAT 31551
Query 206374 CTTGT 206378
|||||
Sbjct 31550 CTTGT 31546
Score = 95.1 bits (104), Expect = 3e-14
Identities = 141/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA---AGTTCTGACACAGTCGAA 206241
|| ||| | || || ||||| ||||| |||||||||| ||| | | || |||
Sbjct 32195 AAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGTGATTCGATAGA-GAA 32137
Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301
| || ||| ||||||||||| || || || ||| || ||| ||| | || |||
Sbjct 32136 T--GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGCAACGCCTGATC 32079
Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361
|| || |||||||||||||||||||| | || ||| | || |||||| |||| || ||
Sbjct 32078 TTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAGGAA 32019
Query 206362 TCTACTCTTCACCTTGT 206378
|| || ||||| |||||
Sbjct 32018 TCCACCCTTCATCTTGT 32002
>seq7187
Length=4100
Score = 95.1 bits (104), Expect = 3e-14
Identities = 141/197 (72%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA---AGTTCTGACACAGTCGAA 206241
|| ||| | || || ||||| ||||| |||||||||| ||| | | || |||
Sbjct 827 AAGACGTTGACTGGCAAAACAATCACACTGGAAGTGGAGCCCAGTGATTCGATAGA-GAA 769
Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301
| || ||| ||||||||||| || || || ||| || ||| ||| | || |||
Sbjct 768 T--GTGAAGGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAGCAACGCCTGATC 711
Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361
|| || |||||||||||||||||||| | || ||| | || |||||| |||| || ||
Sbjct 710 TTTGCGGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAACATCCAAAAGGAA 651
Query 206362 TCTACTCTTCACCTTGT 206378
|| || ||||| |||||
Sbjct 650 TCCACCCTTCATCTTGT 634
>seq7000
Length=1252665
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || ||||| |||||| | || || ||| ||| ||
Sbjct 319800 CAGATTTTTGTGAAAACTCTTACCGGCAAAACTATCACTCTTGAGGTCGAACCTTCCGAT 319741
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
| | || || ||| |||||||| || || || || ||| ||| ||| ||
Sbjct 319740 TCTATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAACAG 319681
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||| || || || ||||| ||||| |||||| | | || | |||||||| |
Sbjct 319680 CGTCTTATTTTTGCTGGCAAGCAATTGGAGGATGGACGTTCCTTATCTGATTACAATATT 319621
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || |||||||||||
Sbjct 319620 CAGAAGGAGTCAACCCTTCACCTTGT 319595
>seq7336
Length=62802
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
||| ||||| | |||||| || || || ||||| || || | ||||||||| | | ||
Sbjct 18552 TCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAGAGGGT 18611
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|| || || || | |||||| ||||||||||||||||||||||||
Sbjct 18612 CCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGA 18657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181621969360651
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |