Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1039 105 6e-18 seq7336 93.3 4e-14 seq8752 82.4 7e-11 >seq1039 Length=57342 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||||| | ||||||| |||||||||||||||||| || ||| Sbjct 49594 ACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGT 49535 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||| || || | | |||| | || ||||| ||||| || ||||| Sbjct 49534 GCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCC 49475 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| ||| |||| | || | | || |||||||||| || | Sbjct 49474 CTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAG 49415 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || |||||||| || || | ||| || |||||| Sbjct 49414 CGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 49372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| ||||||||||| || ||||| |||||| | ||| || || | | Sbjct 31561 GATTCCTTTTGGATGTTGTAGTCAGACAATGTACGACCATCTTCCAACTGCTTTCCCGCA 31620 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || || ||||| || |||||||| ||||| ||| || |||| Sbjct 31621 AAGATCAGGCGTTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTCGCCTTCACA 31680 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | |||||||| || | || | ||||| || || ||||| || Sbjct 31681 TTCTCTATCGAATCACTGGGCTCCACCTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTC 31740 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 31741 ACGAAGATCTGCAT 31754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | ||||||| ||||||||||||||||| || ||| || |||||| | ||| Sbjct 42895 ATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTG 42954 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 || || | | |||| || || || || || || || ||||| || || || ||| || Sbjct 42955 CTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTT 43014 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 |||| | || | || ||| | || ||||| || | ||| | ||||| || || Sbjct 43015 CGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGT 43074 Query 132100 CAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || | ||||| ||||| Sbjct 43075 TAGAGTCTTCACAAAAATTTGCAT 43098 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| |||| ||||| || | | ||||| || ||||||||||||||| || ||| Sbjct 42193 ACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGT 42252 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| | || || || ||||| || ||||| Sbjct 42253 GCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCC 42312 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | | || |||||||||| || | Sbjct 42313 CTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAG 42372 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || |||||||| || || | ||| || |||||| Sbjct 42373 CGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCATG 42415 >seq7336 Length=62802 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||| || |||||| | ||| ||| || || | ||| ||||||| Sbjct 18578 TTGACTCCTTTTGAATATTATAGTCGGAGAGGGTCCGCCCGTCCTCTAACTGCTTACCGG 18637 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| || || ||||||||||| ||||| || ||||| || |||||| ||| | Sbjct 18638 CGAAGATAAGCCGTTGTTGATCTGGTGGTATTCCCTCTTTGTCTTGGATTTTTGCTTTTA 18697 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | ||| | ||||| || || | || | ||||| ||||| ||||| | Sbjct 18698 CGTTCTCGATGGAATCACTTGGCTCAACCTCAAGGGTTATGGTTTTTCCAGTGAGAGTCT 18757 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||| ||||| Sbjct 18758 TAACAAAAATTTGCAT 18773 >seq8752 Length=140378 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 51738 ACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGCCG 51797 || || || | ||| || || || ||| || || | ||||| ||||||| ||||| Sbjct 3651 ACGTTACCGAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCGTGGTTTTTGCCG 3710 Query 51798 GTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 51857 ||| || ||||| |||| ||||| |||||||| | | ||||| ||||||||||| Sbjct 3711 TGGGGATTAAAGTGGGCGCCAGCCGAAGTGCAGCCTTGTGTTGTGTCACCGAATTCGTGG 3770 Query 51858 ACGTGGAATCCGTGC 51872 ||||| || |||||| Sbjct 3771 ACGTGAAAGCCGTGC 3785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476532970229160