Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7336 84.2 2e-11 >seq7336 Length=62802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || |||||| | || || | || || || ||||| Sbjct 18773 ATGCAAATTTTTGTTAAGACTCTCACTGGAAAAACCATAACCCTTGAGGTTGA-GCCAAG 18715 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | |||||| | |||||| |||||| || |||||||| ||||| || ||||| Sbjct 18714 TGATTCCATCGAGAACGTAAAAGCAAAAATCCAAGACAAAGAGGGAATACCACCAGATCA 18655 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | || ||| || || | || || | | | || ||| || || Sbjct 18654 ACAACGGCTTATCTTCGCCGGTAAGCAGTTAGAGGACGGGCGGACCCTCTCCGACTATAA 18595 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||| || || || | ||| | || ||||| | ||||||| Sbjct 18594 TATTCAAAAGGAGTCAACACTCCATCTTGTTCTAAGACTACGAGGAGG 18547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445021343317920