Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11759 174 2e-37 seq8051 98.7 1e-14 seq347 98.7 1e-14 seq6979 93.3 6e-13 seq6965 93.3 6e-13 seq1473 89.7 7e-12 >seq11759 Length=791511 Score = 174 bits (192), Expect = 2e-37 Identities = 308/442 (70%), Gaps = 13/442 (3%) Strand=Plus/Minus Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934 ||| || || ||||| | | ||| | || ||| ||||| ||||| ||||||||||| Sbjct 466528 CGAACGTCACTTCATTTCGTATGTCTTGGC-TTTCTTCGCAGCCAGTGATGGCATCGTTA 466470 Query 1455935 CCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTT 1455994 || || || | ||| || ||||| ||| | || ||||| |||| |||| Sbjct 466469 ATGAAAATCTAACTTTGAATTTTTGTAACGAGGTTCAAATTCCCGAGGCTCGTTGTTTTT 466410 Query 1455995 ACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACA 1456054 | || | || ||||| |||||||||| || ||||||| ||||| || |||||||| | Sbjct 466409 ATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATGTACTCTCTTCTGATCGATA 466350 Query 1456055 CCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGT 1456114 ||||||||||||| || | || ||| || ||| |||||| | ||| |||||| Sbjct 466349 CCTACGTCAAGGATCCAATGGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGT 466290 Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT--CAACAAGGAGGGCCTCGACAC 1456172 || || |||||||| |||||| | | |||||| ||| | | ||| || | Sbjct 466289 GTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAATAAAAAGGC----ACCC 466234 Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGC--ATCTTTTTCTCGGGCAGTT 1456229 | |||||||| || || | || || | ||| || ||| || |||||| | || || Sbjct 466233 TACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTTTCTGGTTCATTT 466174 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289 || |||| || |||||||||||||| || |||||||| || | || |||||| || Sbjct 466173 GCT--TCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGG-CCTCACCTTTAGTAAT 466117 Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311 || | |||||||| ||||||| Sbjct 466116 GAGCTGATCAGTCGAGACGAAG 466095 >seq8051 Length=39876 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||| || || |||| || ||| | Sbjct 27826 ATCTACAAGGTGTTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 27773 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || || |||||||| |||| || || | | ||||| | || Sbjct 27772 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 27713 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 | |||||| || ||||||| || ||| |||| || ||||| ||||| || Sbjct 27712 AGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGCCGAGAGATTCAGACTGCA 27656 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 27655 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCAC 27603 >seq347 Length=8301 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||| || || |||| || ||| | Sbjct 2180 ATCTACAAGGTGTTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 2127 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| || || |||||||| |||| || || | | ||||| | || Sbjct 2126 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 2067 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 | |||||| || ||||||| || ||| |||| || ||||| ||||| || Sbjct 2066 AGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGCCGAGAGATTCAGACTGCA 2010 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 2009 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCAC 1957 >seq6979 Length=33379 Score = 93.3 bits (102), Expect = 6e-13 Identities = 130/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||| ||||| || ||||| |||| || || | | |||| Sbjct 6608 AAGGCGATGTCGATCATGAACTCCTTTGTGAATGACATCTTCGAACGGATTGCCGCCGAA 6549 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAG 725081 | | || |||||| | |||||| || ||| |||| || ||||||||| Sbjct 6548 TCGAGCCGTTTGGCGCATTATAACAAG---AAATCGACAATCACGAGCAGAGAGATCCAG 6492 Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141 || || ||||| ||| | ||| ||| || |||| | |||||| || || ||||||||| Sbjct 6491 ACTGCTGTGCGTCTGCTGCTGCCCGGTGAGTTGGCAAAGCACGCGGTGTCGGAGGGCACC 6432 Query 725142 A 725142 | Sbjct 6431 A 6431 >seq6965 Length=3331 Score = 93.3 bits (102), Expect = 6e-13 Identities = 130/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | |||||||| |||||||| || || |||||||| |||| || || | | ||||| Sbjct 1232 AAGGCGATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGGATTGCCGCCGAG 1291 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAG 725081 | | || |||||| | ||||||| || ||| |||| || ||||||||| Sbjct 1292 TCGAGCCGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATCCAG 1348 Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141 || || ||||| ||| | ||| || || |||| | |||||| || || ||||||||| Sbjct 1349 ACTGCTGTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACC 1408 Query 725142 A 725142 | Sbjct 1409 A 1409 >seq1473 Length=538379 Score = 89.7 bits (98), Expect = 7e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATG 263232 || ||||||||||||| ||| || || |||||| | ||| | | | ||| || Sbjct 275730 GACCTCAAGGCTCTCTACAAAACAGTTTGGGAGATACCCCAGAAAAAAATACTCGATTTG 275789 Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292 || || || || || || | | |||||||||||||| |||||||||||| | || Sbjct 275790 GCAGCTGATCGTGCTCCGTTCATTGACCAGAGCCAGTCTCTCAACCTGTACATGAAGGAG 275849 Query 263293 CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACT 263352 || | || | |||||| ||||| ||| || ||| || || ||||| || Sbjct 275850 CCCAACTACGGTAAAATCACGAGTATGCATTTCTACGCCTGGAAACGTGGACTCAAAACG 275909 Query 263353 GGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 || ||||| ||||||||||| |||| |||||| | | || | ||||| ||| Sbjct 275910 GGGATGTATTATCTGCGCACTAGGCCTGCTGCCGATCCTATCAAGTTCACTGTC 275963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176544690915222