Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 174 2e-37
seq8051 98.7 1e-14
seq347 98.7 1e-14
seq6979 93.3 6e-13
seq6965 93.3 6e-13
seq1473 89.7 7e-12
>seq11759
Length=791511
Score = 174 bits (192), Expect = 2e-37
Identities = 308/442 (70%), Gaps = 13/442 (3%)
Strand=Plus/Minus
Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934
||| || || ||||| | | ||| | || ||| ||||| ||||| |||||||||||
Sbjct 466528 CGAACGTCACTTCATTTCGTATGTCTTGGC-TTTCTTCGCAGCCAGTGATGGCATCGTTA 466470
Query 1455935 CCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTT 1455994
|| || || | ||| || ||||| ||| | || ||||| |||| ||||
Sbjct 466469 ATGAAAATCTAACTTTGAATTTTTGTAACGAGGTTCAAATTCCCGAGGCTCGTTGTTTTT 466410
Query 1455995 ACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACA 1456054
| || | || ||||| |||||||||| || ||||||| ||||| || |||||||| |
Sbjct 466409 ATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATGTACTCTCTTCTGATCGATA 466350
Query 1456055 CCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGT 1456114
||||||||||||| || | || ||| || ||| |||||| | ||| ||||||
Sbjct 466349 CCTACGTCAAGGATCCAATGGAACGCGACTTTCTGTTTAACGCCATTCAAACGTTGCCGT 466290
Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT--CAACAAGGAGGGCCTCGACAC 1456172
|| || |||||||| |||||| | | |||||| ||| | | ||| || |
Sbjct 466289 GTGTTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAATAAAAAGGC----ACCC 466234
Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGC--ATCTTTTTCTCGGGCAGTT 1456229
| |||||||| || || | || || | ||| || ||| || |||||| | || ||
Sbjct 466233 TACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTTTCTGGTTCATTT 466174
Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAAC 1456289
|| |||| || |||||||||||||| || |||||||| || | || |||||| ||
Sbjct 466173 GCT--TCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGG-CCTCACCTTTAGTAAT 466117
Query 1456290 GAATTTATCAGTCGCGACGAAG 1456311
|| | |||||||| |||||||
Sbjct 466116 GAGCTGATCAGTCGAGACGAAG 466095
>seq8051
Length=39876
Score = 98.7 bits (108), Expect = 1e-14
Identities = 163/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||| | ||||||||||| || || |||| || ||| |
Sbjct 27826 ATCTACAAGGTGTTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 27773
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||||||||||||||| || || |||||||| |||| || || | | ||||| | ||
Sbjct 27772 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 27713
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087
| |||||| || ||||||| || ||| |||| || ||||| ||||| ||
Sbjct 27712 AGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGCCGAGAGATTCAGACTGCA 27656
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||||| ||| | ||| || || |||| | |||||| || || ||||||||
Sbjct 27655 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCAC 27603
>seq347
Length=8301
Score = 98.7 bits (108), Expect = 1e-14
Identities = 163/233 (70%), Gaps = 12/233 (5%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||| | ||||||||||| || || |||| || ||| |
Sbjct 2180 ATCTACAAGGTGTTGCGCCAGGTGCACCCGGACAC-----GGGCATC-TCGTCGAAGGCG 2127
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||||||||||||||| || || |||||||| |||| || || | | ||||| | ||
Sbjct 2126 ATGTCGATCATGAACTCCTTCGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 2067
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087
| |||||| || ||||||| || ||| |||| || ||||| ||||| ||
Sbjct 2066 AGGTTGGCGCACTACAACAAG---AAGTCGACTATCACGAGCCGAGAGATTCAGACTGCA 2010
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||||| ||| | ||| || || |||| | |||||| || || ||||||||
Sbjct 2009 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCAC 1957
>seq6979
Length=33379
Score = 93.3 bits (102), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 6/181 (3%)
Strand=Plus/Minus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| | ||||||||||||||||| ||||| || ||||| |||| || || | | ||||
Sbjct 6608 AAGGCGATGTCGATCATGAACTCCTTTGTGAATGACATCTTCGAACGGATTGCCGCCGAA 6549
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAG 725081
| | || |||||| | |||||| || ||| |||| || |||||||||
Sbjct 6548 TCGAGCCGTTTGGCGCATTATAACAAG---AAATCGACAATCACGAGCAGAGAGATCCAG 6492
Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141
|| || ||||| ||| | ||| ||| || |||| | |||||| || || |||||||||
Sbjct 6491 ACTGCTGTGCGTCTGCTGCTGCCCGGTGAGTTGGCAAAGCACGCGGTGTCGGAGGGCACC 6432
Query 725142 A 725142
|
Sbjct 6431 A 6431
>seq6965
Length=3331
Score = 93.3 bits (102), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| | |||||||| |||||||| || || |||||||| |||| || || | | |||||
Sbjct 1232 AAGGCGATGTCGATAATGAACTCCTTCGTGAACGACATCTTCGAGCGGATTGCCGCCGAG 1291
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAG 725081
| | || |||||| | ||||||| || ||| |||| || |||||||||
Sbjct 1292 TCGAGCCGGTTGGCGCATTACAACAAG---AAGTCGACAATCACGAGCAGAGAGATCCAG 1348
Query 725082 ACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACC 725141
|| || ||||| ||| | ||| || || |||| | |||||| || || |||||||||
Sbjct 1349 ACTGCTGTGCGTCTGCTGCTGCCGGGTGAGTTGGCGAAGCACGCGGTGTCGGAGGGCACC 1408
Query 725142 A 725142
|
Sbjct 1409 A 1409
>seq1473
Length=538379
Score = 89.7 bits (98), Expect = 7e-12
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATG 263232
|| ||||||||||||| ||| || || |||||| | ||| | | | ||| ||
Sbjct 275730 GACCTCAAGGCTCTCTACAAAACAGTTTGGGAGATACCCCAGAAAAAAATACTCGATTTG 275789
Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292
|| || || || || || | | |||||||||||||| |||||||||||| | ||
Sbjct 275790 GCAGCTGATCGTGCTCCGTTCATTGACCAGAGCCAGTCTCTCAACCTGTACATGAAGGAG 275849
Query 263293 CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACT 263352
|| | || | |||||| ||||| ||| || ||| || || ||||| ||
Sbjct 275850 CCCAACTACGGTAAAATCACGAGTATGCATTTCTACGCCTGGAAACGTGGACTCAAAACG 275909
Query 263353 GGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406
|| ||||| ||||||||||| |||| |||||| | | || | ||||| |||
Sbjct 275910 GGGATGTATTATCTGCGCACTAGGCCTGCTGCCGATCCTATCAAGTTCACTGTC 275963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176544690915222
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |