Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1039 152 5e-32 seq7000 98.7 9e-16 seq8132 87.8 2e-12 >seq1039 Length=57342 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 41732 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 41791 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || || || ||||| || |||||||| | ||| Sbjct 41792 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 41851 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | | | | | ||| |||| |||||| Sbjct 41852 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 41911 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || || | || ||||||||||||||||| Sbjct 41912 TCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 41960 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42019 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || || || ||||| || |||||||| | ||| Sbjct 42020 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42079 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | | | | | ||| |||| |||||| Sbjct 42080 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 42139 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || || | || ||||||||||||||||| Sbjct 42140 TCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| | Sbjct 42188 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42247 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || || || ||||| || |||||||| | ||| Sbjct 42248 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42307 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | | | | | ||| |||| |||||| Sbjct 42308 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 42367 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||| ||||| ||||| Sbjct 42368 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | || |||||| || | ||| |||||| |||||||||||||| | | Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || ||||||||||| || || || ||||| || |||||||| | ||| Sbjct 42476 AAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGA 42535 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || |||||| ||||| | | | || ||| || | |||||| Sbjct 42536 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 42595 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 42596 TCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 Score = 143 bits (158), Expect = 2e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | || ||| || | || |||| |||||| |||||||| Sbjct 42907 CTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAA 42966 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||||| |||| || ||||||||| ||||| ||||| | | Sbjct 42967 GATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 43026 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||||||||||| |||||| ||||| || || | ||| ||||| Sbjct 43027 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCAC 43086 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 43087 AAAAATTTGCAT 43098 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | | ||||||||| | || |||||||||||||||||| |||| | Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| |||||| || ||||| ||||| || || ||||| | ||| Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | | | | || ||| |||| |||||| Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| || ||||| ||||| ||||| Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| | | || || | || |||| |||||| || ||||| Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || ||||| | |||| || ||||||||| ||||| ||||| | | Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTC 41659 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | | ||| |||| |||||||||| ||| || || || || || | || |||||| Sbjct 41660 TCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACA 41719 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 41720 AATATCTGCAT 41730 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||| || || | | || || |||| |||| ||||||||| || || Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||| || || | |||| || |||||| ||| |||||| ||| | | | Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | ||| || |||| ||| || || || || || | ||| || || Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 42859 AAAGATTTGCAT 42870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| |||| | || || | || |||| ||| || || ||||| Sbjct 49336 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAA 49277 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| || | | ||||||||| ||||| ||||| | Sbjct 49276 GATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTT 49217 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | || ||||| | ||||| || || || || | || ||||| Sbjct 49216 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCAC 49157 Query 35725 AAATATCTGCATTCTGTGCGCAC 35747 || || ||||| || || ||| Sbjct 49156 GAAGATTTGCATGATGAGCACAC 49134 >seq7000 Length=1252665 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||| |||||||| | |||| || | || |||| ||||| || ||||| Sbjct 319612 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 319671 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||| ||||| | |||| | |||||||||| ||||| ||||| | | Sbjct 319672 AATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATT 319731 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||| | ||| ||||| | ||||| ||||| || || | ||||||||| Sbjct 319732 CTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 319791 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 319792 AAAAATCTGCAT 319803 >seq8132 Length=63671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364 |||| ||||||||| |||||||| |||||||| || ||| |||||||| | |||| | | Sbjct 52629 AGGAGTTATGTGGTCAATTTGCGGAGTCCACGATCAAGGC-TGGCGAGAACGACCCGTTT 52687 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 ||||||| | ||||||||||||| | || || ||||| |||||||| Sbjct 52688 TCGGCAAAATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 52739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450719607865480