Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 152 5e-32
seq7000 98.7 9e-16
seq8132 87.8 2e-12
>seq1039
Length=57342
Score = 152 bits (168), Expect = 5e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 41732 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 41791
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || | || || |||||||| || || || ||||| || |||||||| | |||
Sbjct 41792 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 41851
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | | ||| |||| ||||||
Sbjct 41852 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 41911
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||| || || || || || | || |||||||||||||||||
Sbjct 41912 TCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958
Score = 152 bits (168), Expect = 5e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 41960 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42019
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || | || || |||||||| || || || ||||| || |||||||| | |||
Sbjct 42020 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42079
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | | ||| |||| ||||||
Sbjct 42080 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 42139
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||| || || || || || | || |||||||||||||||||
Sbjct 42140 TCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| || | || |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 42188 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 42247
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || | || || |||||||| || || || ||||| || |||||||| | |||
Sbjct 42248 AAGGTGCGACCATCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGA 42307
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | | ||| |||| ||||||
Sbjct 42308 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACC 42367
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||| || || || || |||| || ||||| ||||| |||||
Sbjct 42368 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| || | || |||||| || | ||| |||||| |||||||||||||| | |
Sbjct 42416 CCACCACGCAAACGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGAC 42475
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || | || ||||||||||| || || || ||||| || |||||||| | |||
Sbjct 42476 AAGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGA 42535
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||| || |||||| ||||| | | | || ||| || | ||||||
Sbjct 42536 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACC 42595
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| || || || || | ||||| ||||||||||||||
Sbjct 42596 TCCAAGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642
Score = 143 bits (158), Expect = 2e-29
Identities = 147/192 (77%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||||||||||||||| || | || ||| || | || |||| |||||| ||||||||
Sbjct 42907 CTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGACCATCTTCCAACTGCTTCCCCGCAAA 42966
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || |||||||||| |||| || ||||||||| ||||| ||||| | |
Sbjct 42967 GATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATT 43026
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||||| | ||||||||||| |||||| ||||| || || | ||| |||||
Sbjct 43027 CTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTGATTGTTTTGCCGGTTAGAGTCTTCAC 43086
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 43087 AAAAATTTGCAT 43098
Score = 143 bits (158), Expect = 2e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||||| | | ||||||||| | || |||||||||||||||||| |||| |
Sbjct 49599 CCGCCACGTAGGCGAAGCACCAAATGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGAC 49540
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || |||| |||||| || ||||| ||||| || || ||||| | |||
Sbjct 49539 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGA 49480
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || ||||||||| |||||| ||||| | | | | || ||| |||| ||||||
Sbjct 49479 ATGCCCTCCTTGTCTTGAATCTTTGCCTTCACATTCTCTATCGAGTCACTCGGCTCCACC 49420
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||| || || || || |||| || ||||| ||||| |||||
Sbjct 49419 TCCAGCGTAATAGTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 49373
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || ||||||||||| | | || || | || |||| |||||| || |||||
Sbjct 41540 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTGCCAGCAAAG 41599
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || || ||||| | |||| || ||||||||| ||||| ||||| | |
Sbjct 41600 ATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTC 41659
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | | ||| |||| |||||||||| ||| || || || || || | || ||||||
Sbjct 41660 TCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTTAGCGTCTTCACA 41719
Query 35726 AATATCTGCAT 35736
|||||||||||
Sbjct 41720 AATATCTGCAT 41730
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||||||||| || || | | || || |||| |||| ||||||||| || ||
Sbjct 42679 CTCCTTTTGAATGTTATAGTCAGAAAGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAA 42738
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||| || || | |||| || |||||| ||| |||||| ||| | | |
Sbjct 42739 GATCAAACGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGGATCTTCGCCTTTACATT 42798
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || || || | ||| || |||| ||| || || || || || | ||| || ||
Sbjct 42799 CTCAATCGAATCACTGGGTTCAACTTCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGAC 42858
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 42859 AAAGATTTGCAT 42870
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||||||||||||||| |||| | || || | || |||| ||| || || |||||
Sbjct 49336 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTGCCAGCAAA 49277
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| |||| || | | ||||||||| ||||| ||||| |
Sbjct 49276 GATCAAACGCTGCTGATCCGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTT 49217
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || || || | || ||||| | ||||| || || || || | || |||||
Sbjct 49216 CTCAATCGAATCACTAGGCTCAACCTCGAGGGTGATAGTCTTCCCGGTAAGCGTCTTCAC 49157
Query 35725 AAATATCTGCATTCTGTGCGCAC 35747
|| || ||||| || || |||
Sbjct 49156 GAAGATTTGCATGATGAGCACAC 49134
>seq7000
Length=1252665
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||| |||||||| | |||| || | || |||| ||||| || |||||
Sbjct 319612 CTCCTTCTGAATATTGTAATCAGATAAGGAACGTCCATCCTCCAATTGCTTGCCAGCAAA 319671
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| ||||| | |||| | |||||||||| ||||| ||||| | |
Sbjct 319672 AATAAGACGCTGTTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTAGCCTTCACATT 319731
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||| | ||| ||||| | ||||| ||||| || || | |||||||||
Sbjct 319732 CTCAATAGAATCGGAAGGTTCGACCTCAAGAGTGATAGTTTTGCCGGTAAGAGTTTTCAC 319791
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 319792 AAAAATCTGCAT 319803
>seq8132
Length=63671
Score = 87.8 bits (96), Expect = 2e-12
Identities = 88/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364
|||| ||||||||| |||||||| |||||||| || ||| |||||||| | |||| | |
Sbjct 52629 AGGAGTTATGTGGTCAATTTGCGGAGTCCACGATCAAGGC-TGGCGAGAACGACCCGTTT 52687
Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416
||||||| | ||||||||||||| | || || ||||| ||||||||
Sbjct 52688 TCGGCAAAATTCGCTACATGAACTTCGCTGGCTGTAAGAGAAAATTTGATGT 52739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450719607865480
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