Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1039 114 1e-20 seq7336 91.5 1e-13 seq7187 84.2 2e-11 >seq1039 Length=57342 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| || || || || || |||||||||||||||||||| | ||| || Sbjct 42881 AGTCGAAGCACAAGATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGACAGGGTCCGA 42940 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || ||||| || | || ||||| || || || ||||| || Sbjct 42941 CCATCTTCCAACTGCTTCCCCGCAAAGATAAGGCGTTGCTGGTCCGGTGGAATGCCCTCC 43000 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | ||||||| | |||||| || || || Sbjct 43001 TTGTCTTGAATCTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCCACCTCCAGCGTG 43060 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||||| ||| || || ||||||||||| Sbjct 43061 ATTGTTTTGCCGGTTAGAGTCTTCACAAAAATTTGCAT 43098 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||||||||||||||||||| || ||| || Sbjct 49362 AGACGAAGCACCAGGTGAAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGA 49303 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||||||| ||||| ||||||||||||||||| || || || || || Sbjct 49302 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGATCCGGTGGGATACCCTCC 49243 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | | || | || || ||||| || Sbjct 49242 TTGTCTTGAATCTTGGCCTTCACGTTCTCAATCGAATCACTAGGCTCAACCTCGAGGGTG 49183 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| |||||||| Sbjct 49182 ATAGTCTTCCCGGTAAGCGTCTTCACGAAGATTTGCAT 49145 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | ||||||||| ||||| || |||||||||||||| ||||| | Sbjct 42644 CCACCACGGAGTCGAAGCACGAGGTGAAGCGTTGACTCCTTTTGAATGTTATAGTCAGAA 42703 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || | ||| || || || || ||||||||||| ||||| || || Sbjct 42704 AGAGTGCGACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGA 42763 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | | || | ||| || Sbjct 42764 ATGCCCTCCTTATCCTGGATCTTCGCCTTTACATTCTCAATCGAATCACTGGGTTCAACT 42823 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||||| ||| || || || |||||||| Sbjct 42824 TCCAGCGTTATGGTCTTGCCGGTTAGAGTCTTGACAAAGATTTGCAT 42870 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| | ||| ||||| || ||||| ||||||||||||||| | |||| || Sbjct 42200 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 42259 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| || ||||| || ||||| || ||||| || || || ||||| || || Sbjct 42260 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 42319 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || || || || | || ||| || ||||| || || ||||| Sbjct 42320 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 42379 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || | || || ||||| |||||||| Sbjct 42380 GTCTTCCCAGTCAGGGTCTTCACGAATATTTGCAT 42414 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| | ||| ||||| || ||||| ||||||||||||||| | |||| || Sbjct 41744 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 41803 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| || ||||| || ||||| || ||||| || || || ||||| || || Sbjct 41804 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 41863 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || || || || | || ||| || ||||| || || ||||| Sbjct 41864 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 41923 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||| || || || || || ||||| Sbjct 41924 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 41958 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| | ||| ||||| || ||||| ||||||||||||||| | |||| || Sbjct 41972 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCA 42031 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| || ||||| || ||||| || ||||| || || || ||||| || || Sbjct 42032 TCCTCTAGCTGCTTTCCTGCGAAGATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTTG 42091 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||| || || || || || | || ||| || ||||| || || ||||| Sbjct 42092 TCTTGGATCTTCGCCTTCACATTCTCTATTGAGTCACTCGGCTCCACCTCCAGCGTAATA 42151 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||| || || || || || ||||| Sbjct 42152 GTCTTCCCAGTTAGCGTCTTCACAAATATCTGCAT 42186 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| || || || |||||||||||||| ||||||||||| | | Sbjct 31528 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 31587 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || || || || || | ||| || || ||||| |||| || ||||| || || || Sbjct 31588 AA-TGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGG 31646 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || |||||||| || || || || | | || | ||||| Sbjct 31647 AATGCCTTCCTTATCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCAC 31706 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || ||||| ||||||| ||| || ||||| || |||||| Sbjct 31707 CTCCAGTGTGATTGTTTTGCCGGTTAGAGTCTTCACGAAGATCTGCATT 31755 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || ||||||||||||||||||||| | |||| || || || | ||| Sbjct 49575 TGCAGAGTTGACTCCTTTTGAATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGC 49516 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| ||||| ||||| || || || || || || ||||| || || |||||||| ||| Sbjct 49515 TTGCCAGCAAAGATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 49456 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | | ||| || ||||| || || ||||| || || || || Sbjct 49455 GCCTTCACATTCTCTATCGAGTCACTCGGCTCCACCTCCAGCGTAATAGTCTTCCCAGTC 49396 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 49395 AGGGTCTTCACGAATATTTGCAT 49373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||| ||| | ||| ||||| || ||||| ||||||||||| || | ||| |||| || Sbjct 42428 CGCAGCACCAAGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCAGACAA-GGTGCGACC 42486 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || ||||| || ||||| |||||||| || ||||| || || || ||||| || || Sbjct 42487 ATCCTCCAGCTGCTTTCCTGCGAAAATCAATCGTTGCTGGTCTGGTGGAATGCCCTCCTT 42546 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||| || || || || || | | ||| | ||||| || | || || Sbjct 42547 ATCTTGGATCTTCGCCTTCACGTTCTCTATCGAGTCACTTGGCTCCACCTCCAAGGTGAT 42606 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || | |||||||| || || ||||| Sbjct 42607 GGTCTTGCCAGTGAGGGTTTTAACAAATATCTGCAT 42642 >seq7336 Length=62802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||| | || || || || || || ||||||||||| || |||||| Sbjct 18547 CCTCCTCGTAGTCTTAGAACAAGATGGAGTGTTGACTCCTTTTGAATATTATAGTCGGAG 18606 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || | ||| || || || || || | || || ||||| || ||| Sbjct 18607 AGGGTCCGCCCGTCCTCTAACTGCTTACCGGCGAAGATAAGCCGTTGTTGATCTGGTGGT 18666 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| |||||| ||| || || | | || | || || Sbjct 18667 ATTCCCTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCGATGGAATCACTTGGCTCAACC 18726 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||| || || | ||| ||||| |||||||||||| Sbjct 18727 TCAAGGGTTATGGTTTTTCCAGTGAGAGTCTTAACAAAAATTTGCATT 18774 >seq7187 Length=4100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| || || || |||||||||||||| ||||||||||| | | Sbjct 616 CCTCCACGAAGACGAAGCACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 675 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || || || || || | ||| || || ||||| |||| || ||||| || || || Sbjct 676 AA-TGTACGACCATCTTCCAACTGCTTTCCCGCAAAGATCAGGCGTTGCTGGTCTGGTGG 734 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || |||||||| || || || || | | || | ||||| Sbjct 735 AATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTCTCTATCGAATCACTGGGCTCCAC 794 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || || || ||||| || ||||| Sbjct 795 TTCCAGTGTGATTGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505315445170120