Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 277 2e-69
seq11759 239 6e-58
>seq1473
Length=538379
Score = 277 bits (306), Expect = 2e-69
Identities = 434/616 (70%), Gaps = 4/616 (1%)
Strand=Plus/Minus
Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567
|| ||| ||| ||||| || |||||| ||| | | || || ||||||| || |
Sbjct 274592 TAAAGCATTTCAAATTCCTCCCCCCAACAGTCAGCAAGACCGGGGCATTCATGGGGGTCC 274533
Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627
|| || | ||||| | | | ||| |||||| ||||| ||||||||||||| ||||||
Sbjct 274532 ATAAAGGTCCACAAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGT 274473
Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687
|| | |||||||| | | | | | || ||| || || || || | || | |
Sbjct 274472 GCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACA 274413
Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747
|||| || | ||| | |||||||||||| ||||| || || | | | || ||||||||
Sbjct 274412 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 274353
Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807
|| ||||||||||| | || | || ||| | || |||| | |||||||| | || |
Sbjct 274352 TTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 274293
Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG-CGAATATTACTAAT 69866
|| || || | ||||| ||||||| ||| ||| | |||||| || || ||
Sbjct 274292 CCGTTGGACTCCCCATTGGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 274234
Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926
| ||||| || || || || |||| ||||| || ||||| |||| | ||||||||
Sbjct 274233 ATTGAGACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATA 274174
Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986
||||||||| || || || ||| |||| |||| | ||||||||| ||||| ||| | |
Sbjct 274173 TATACCCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTA 274114
Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046
|| || |||||||| | || || || |||||| | ||||| |||||||| | ||
Sbjct 274113 AGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAG 274054
Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCA 70105
||| || || |||||||| | || | ||| ||| |||||| ||||||| ||| ||||
Sbjct 274053 ATTATAGGTCTCAATAGCAGCGTCCACATCTTCAC-CATGAATACCTATCGAGACGCGCA 273995
Query 70106 TCAACATATGCTGAGG 70121
| ||||| | ||||||
Sbjct 273994 TAAACATGTACTGAGG 273979
>seq11759
Length=791511
Score = 239 bits (264), Expect = 6e-58
Identities = 421/609 (69%), Gaps = 6/609 (1%)
Strand=Plus/Plus
Query 39597 ATAA-ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATT 39655
|||| ||||||||| || | ||| || || || || ||||| || |||| ||| ||
Sbjct 466052 ATAATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATC 466111
Query 39656 AATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715
| || ||| ||| ||||| |||||||| ||||||||||| |||||||| || |||| |
Sbjct 466112 AGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAA 466171
Query 39716 GCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG 39775
||||| || ||||||||||| | |||||| || || || || || || || | ||| ||
Sbjct 466172 GCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCG 466231
Query 39776 TAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAA 39832
|| || | |||| | |||||| | | |||||||| || ||||| |||||
Sbjct 466232 TAGGGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACAC 466291
Query 39833 GGCATTGTTTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGT 39891
|||| |||| || || ||||| ||| | | | || ||| ||| || || || ||
Sbjct 466292 GGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCAT-TGGATCCTTGACGTAGGT 466350
Query 39892 ATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTA 39951
||| || | ||| |||||||| ||||| |||||||| | || | || | ||| ||
Sbjct 466351 ATCGATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATA 466410
Query 39952 AAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATT 40011
|||||| | || || | |||||| ||||| |||||| | | | |||||||||
Sbjct 466411 AAAACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATT 466470
Query 40012 CACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 40071
|| || |||||||| || || || || ||||| |||| ||| || | ||| |
Sbjct 466471 AACGATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCC 466530
Query 40072 GGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131
| | | | ||||||| ||| ||| || | || ||| ||||| ||| | |||||
Sbjct 466531 ATCATTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCA 466590
Query 40132 AAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191
|| || || | || || ||||| | | ||| |||||| | ||||| || || | |
Sbjct 466591 GAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCAC 466650
Query 40192 AACAAATCT 40200
||| |||||
Sbjct 466651 AACGAATCT 466659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686796052506840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |