Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1473 277 2e-69 seq11759 239 6e-58 >seq1473 Length=538379 Score = 277 bits (306), Expect = 2e-69 Identities = 434/616 (70%), Gaps = 4/616 (1%) Strand=Plus/Minus Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 || ||| ||| ||||| || |||||| ||| | | || || ||||||| || | Sbjct 274592 TAAAGCATTTCAAATTCCTCCCCCCAACAGTCAGCAAGACCGGGGCATTCATGGGGGTCC 274533 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 || || | ||||| | | | ||| |||||| ||||| ||||||||||||| |||||| Sbjct 274532 ATAAAGGTCCACAAACTACCTGCCTCAACTCGCTTCATGAATAGATCGGGAACCCAAAGT 274473 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGA 69687 || | |||||||| | | | | | || ||| || || || || | || | | Sbjct 274472 GCGAGGAAGAGATCCCGAGCGCGAATCTCCTCAGCGCCAGTGTTCTTCCGTAACTCCACA 274413 Query 69688 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTA 69747 |||| || | ||| | |||||||||||| ||||| || || | | | || |||||||| Sbjct 274412 AACTGCAGTACATCCGGATGCCATGGTTCGAGATAGATGGCAAAGGCACCGGGTCGTTTG 274353 Query 69748 TTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATA 69807 || ||||||||||| | || | || ||| | || |||| | |||||||| | || | Sbjct 274352 TTGCCTCCCTGATCGACATAACGAGCGGTGCTGTTGAAGACCCGAAGCATCGGTACAAGA 274293 Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG-CGAATATTACTAAT 69866 || || || | ||||| ||||||| ||| ||| | |||||| || || || Sbjct 274292 CCGTTGGACTCCCCATTGGTTCCAGCGATA-AACGTATTCTTGCTTCGGATGCAGTGAAC 274234 Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926 | ||||| || || || || |||| ||||| || ||||| |||| | |||||||| Sbjct 274233 ATTGAGACCGATCCCACCCGCGTTTTTCGAGATCAGTGCACATTGTTTGAGCGTGTCATA 274174 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 ||||||||| || || || ||| |||| |||| | ||||||||| ||||| ||| | | Sbjct 274173 TATACCCTCGATACTGTCGTCTTTCATTGTAAGCAAAAAACAGCTGGACATCTGAGGGTA 274114 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 || || |||||||| | || || || |||||| | ||||| |||||||| | || Sbjct 274113 AGGCGTCCCAGCATTAAAAAGAGTGGGTGAGGCGTGAATCAACCACTTTTCAGACATTAG 274054 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCA 70105 ||| || || |||||||| | || | ||| ||| |||||| ||||||| ||| |||| Sbjct 274053 ATTATAGGTCTCAATAGCAGCGTCCACATCTTCAC-CATGAATACCTATCGAGACGCGCA 273995 Query 70106 TCAACATATGCTGAGG 70121 | ||||| | |||||| Sbjct 273994 TAAACATGTACTGAGG 273979 >seq11759 Length=791511 Score = 239 bits (264), Expect = 6e-58 Identities = 421/609 (69%), Gaps = 6/609 (1%) Strand=Plus/Plus Query 39597 ATAA-ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATT 39655 |||| ||||||||| || | ||| || || || || ||||| || |||| ||| || Sbjct 466052 ATAATATGTTTAAAAATAAGGCATGCAAAATCCGTGTGGAGGCCTTCGTCTCGACTGATC 466111 Query 39656 AATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 | || ||| ||| ||||| |||||||| ||||||||||| |||||||| || |||| | Sbjct 466112 AGCTCATTACTAAAGGTGAGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAA 466171 Query 39716 GCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG 39775 ||||| || ||||||||||| | |||||| || || || || || || || | ||| || Sbjct 466172 GCAAATGAACCAGAAAAGAATACGCCTTCAACGGCAGCGAACGCCACCAGACGCTCGGCG 466231 Query 39776 TAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAA 39832 || || | |||| | |||||| | | |||||||| || ||||| ||||| Sbjct 466232 TAGGGTGCCTTTTTATTTGCAATCCACCTAAGCGCCCAATCGGCCTTCTTAGCAACACAC 466291 Query 39833 GGCATTGTTTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGT 39891 |||| |||| || || ||||| ||| | | | || ||| ||| || || || || Sbjct 466292 GGCAACGTTTGAATGGCGTTAAACAGAAAGTCGCGTTCCAT-TGGATCCTTGACGTAGGT 466350 Query 39892 ATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTA 39951 ||| || | ||| |||||||| ||||| |||||||| | || | || | ||| || Sbjct 466351 ATCGATCAGAAGAGAGTACATTTCAGAATGAATGTTTTCGACGGCGACTTGCATTCCATA 466410 Query 39952 AAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATT 40011 |||||| | || || | |||||| ||||| |||||| | | | ||||||||| Sbjct 466411 AAAACAACGAGCCTCGGGAATTTGAACCTCGTTACAAAAATTCAAAGTTAGATTTTCATT 466470 Query 40012 CACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 40071 || || |||||||| || || || || ||||| |||| ||| || | ||| | Sbjct 466471 AACGATGCCATCACTGGCTGCGAAGAAAGCCAAGACATACGAAATGAAGTGACGTTCGCC 466530 Query 40072 GGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131 | | | | ||||||| ||| ||| || | || ||| ||||| ||| | ||||| Sbjct 466531 ATCATTAAGGCTTTCCCAGTCAGTGAGATCCTTCGCTAGATCAACTTCCTCAACCGTCCA 466590 Query 40132 AAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || || || | || || ||||| | | ||| |||||| | ||||| || || | | Sbjct 466591 GAAAGAGGCAACCGCTTTCTTGTAGAACTCCCAAATATCATGGTATTGGATGGGCATCAC 466650 Query 40192 AACAAATCT 40200 ||| ||||| Sbjct 466651 AACGAATCT 466659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686796052506840