Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07]
13,131 sequences; 129,810,970 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 161 8e-35
>seq11759
Length=791511
Score = 161 bits (178), Expect = 8e-35
Identities = 400/594 (67%), Gaps = 15/594 (3%)
Strand=Plus/Minus
Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756
|| || || ||| | || || ||||| ||||| || ||| | | ||||| |||||
Sbjct 466659 AGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTT 466600
Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGC 43815
|| || || ||||| | || ||||||||| | | || || | | | ||| | ||
Sbjct 466599 GCCTCTTTCTGGACGGTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGACTGGGAAAGC 466540
Query 43816 ATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874
|||| | | ||| || || || || | || ||||| || || || || || |
Sbjct 466539 CTTAATGATGGC--GAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCAGCCAGTG 466482
Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAA 43933
| || || || ||||||||| | | | ||| | || || |||||| | || ||
Sbjct 466481 ATGGCATCGTTAATGAAAATCTAACTT-TGAATTTTTGTAACGAGGTTCAAATTCCCGAG 466423
Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993
|| || ||||||||||| | ||| | ||| | ||||| |||||||| ||||||||| |
Sbjct 466422 GCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATGTACTCT 466363
Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA-GCATCGAT-TGTTTAATGCGA 44051
|||||||| ||||| ||| |||| ||| || ||| || | | ||||||| || |
Sbjct 466362 CTTCTGATCGATACCTACGTCAAGGAT--CCAATGGAACGCGACTTTCTGTTTAACGCCA 466305
Query 44052 TAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAAT 44107
| |||| | || || | || | || || || ||||| |||| ||||| ||||
Sbjct 466304 TTCAAACGTTGCCGTGTG-TTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAAT 466246
Query 44108 TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167
||| | | | | || || || || ||||| || | || |||||| | ||||||
Sbjct 466245 AAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTT 466186
Query 44168 TCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACG 44227
|| || || ||||| |||| || ||| | ||||| || ||| | |||||||| | ||
Sbjct 466185 TCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACC 466126
Query 44228 TTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281
||| |||||| | || ||||| || |||||| | || |||||||| |||
Sbjct 466125 TTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGATTTTGCATGC 466072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397392393501655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |