Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taenia_20solium_20[genbank_20GCA_5F001870725.1_202016-11-07] 13,131 sequences; 129,810,970 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11759 161 8e-35 >seq11759 Length=791511 Score = 161 bits (178), Expect = 8e-35 Identities = 400/594 (67%), Gaps = 15/594 (3%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || || ||| | || || ||||| ||||| || ||| | | ||||| ||||| Sbjct 466659 AGATTCGTTGTGATGCCCATCCAATACCATGATATTTGGGAGTTCTACAAGAAAGCGGTT 466600 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGC 43815 || || || ||||| | || ||||||||| | | || || | | | ||| | || Sbjct 466599 GCCTCTTTCTGGACGGTTGAGGAAGTTGATCTAGCGAAGGATCTCACTGACTGGGAAAGC 466540 Query 43816 ATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| | | ||| || || || || | || ||||| || || || || || | Sbjct 466539 CTTAATGATGGC--GAACGTCACTTCATTTCGTATGTCTTGGCTTTCTTCGCAGCCAGTG 466482 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAA 43933 | || || || ||||||||| | | | ||| | || || |||||| | || || Sbjct 466481 ATGGCATCGTTAATGAAAATCTAACTT-TGAATTTTTGTAACGAGGTTCAAATTCCCGAG 466423 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || ||||||||||| | ||| | ||| | ||||| |||||||| ||||||||| | Sbjct 466422 GCTCGTTGTTTTTATGGAATGCAAGTCGCCGTCGAAAACATTCATTCTGAAATGTACTCT 466363 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA-GCATCGAT-TGTTTAATGCGA 44051 |||||||| ||||| ||| |||| ||| || ||| || | | ||||||| || | Sbjct 466362 CTTCTGATCGATACCTACGTCAAGGAT--CCAATGGAACGCGACTTTCTGTTTAACGCCA 466305 Query 44052 TAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAAT 44107 | |||| | || || | || | || || || ||||| |||| ||||| |||| Sbjct 466304 TTCAAACGTTGCCGTGTG-TTGCTAAGAAGGCCGATTGGGCGCTTAGGTGGATTGCAAAT 466246 Query 44108 TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 ||| | | | | || || || || ||||| || | || |||||| | |||||| Sbjct 466245 AAAAAGGCACCCTACGCCGAGCGTCTGGTGGCGTTCGCTGCCGTTGAAGGCGTATTCTTT 466186 Query 44168 TCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACG 44227 || || || ||||| |||| || ||| | ||||| || ||| | |||||||| | || Sbjct 466185 TCTGGTTCATTTGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCACC 466126 Query 44228 TTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||| |||||| | || ||||| || |||||| | || |||||||| ||| Sbjct 466125 TTTAGTAATGAGCTGATCAGTCGAGACGAAGGCCTCCACACGGATTTTGCATGC 466072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397392393501655